WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 21575196

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
116649632	GT-AG	1.000000099473604e-05	1570	rna-XM_008939664.1 21575196	1	50530	52099	Merops nubicus 57421	CCA\|GTAAGTGAGT...TTTACCCAGATA/TCCAAGTTTACC...TGCAG\|GCA	1	1	0.632
116649633	GT-AG	1.000000099473604e-05	1008	rna-XM_008939664.1 21575196	2	49422	50429	Merops nubicus 57421	CAT\|GTGAGTATAT...TTCTTTTTAACA/TTCTTTTTAACA...TCCAG\|TTA	2	1	9.666
116649634	GT-AG	1.4200872318551897e-05	693	rna-XM_008939664.1 21575196	3	48570	49262	Merops nubicus 57421	CAG\|GTAAGTTCCC...TTTTTCTTTTCT/ACAATACAGATC...TCCAG\|ACA	2	1	24.029
116649635	GT-AG	1.000000099473604e-05	252	rna-XM_008939664.1 21575196	4	48164	48415	Merops nubicus 57421	AAG\|GTGAGGCAGG...CTTCCCTTACTC/TCTTCCCTTACT...TGCAG\|ATC	0	1	37.94
116649636	GT-AG	0.0059745876576205	457	rna-XM_008939664.1 21575196	5	47568	48024	Merops nubicus 57421	GAG\|GTATGTTTCC...ATGCCCTTGAGG/ACTTCTTTCATC...TACAG\|TGT	1	1	50.497
116649637	GT-AG	0.000238987457045	191	rna-XM_008939664.1 21575196	6	47245	47435	Merops nubicus 57421	CTT\|GTAAGTATGA...CTTCTCTTGATT/CTTCTCTTGATT...TGCAG\|GTA	1	1	62.421
116649638	GT-AG	1.000000099473604e-05	485	rna-XM_008939664.1 21575196	7	46609	47093	Merops nubicus 57421	GAG\|GTAATAACAG...AATGCTTTGAGG/ATGCAACTAATC...TTCAG\|GCA	2	1	76.061
116649639	GT-AG	1.000000099473604e-05	478	rna-XM_008939664.1 21575196	8	46062	46539	Merops nubicus 57421	CTT\|GTGAGTGGCA...ATCATCTTAGCT/TCTTAGCTGACT...AATAG\|GTT	2	1	82.294

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);