introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 21575164

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
116649307 GT-AG 0 1.000000099473604e-05 50101 rna-XM_008935457.1 21575164 1 203 50303 Merops nubicus 57421 AAG|GTGAGCTGCC...TTTTTTTTCCCT/TTTATTTTTATG...CCCAG|TGT 1 1 8.617
116649308 GT-AG 0 1.000000099473604e-05 7092 rna-XM_008935457.1 21575164 2 50459 57550 Merops nubicus 57421 AAG|GTCAGGCTTT...CTACCCTTAAAA/ATTACCCTTACA...CCCAG|GGT 0 1 26.19
116649309 GT-AG 0 0.0511677948301965 3610 rna-XM_008935457.1 21575164 3 57584 61193 Merops nubicus 57421 AGT|GTATGTATTT...GTTTTCTTGCCA/TTTCTTGCCACC...CTTAG|GGA 0 1 29.932
116649310 GT-AG 0 1.9764981183610447e-05 3225 rna-XM_008935457.1 21575164 4 61248 64472 Merops nubicus 57421 AAG|GTCTGTTAAG...GAGGTTTTATTG/AGAGGTTTTATT...TTTAG|CCA 0 1 36.054
116649311 GT-AG 0 1.000000099473604e-05 4634 rna-XM_008935457.1 21575164 5 64575 69208 Merops nubicus 57421 AAG|GTAAGTAAAT...TTATTTTTAATG/ATTGATCTTATT...TCTAG|CCA 0 1 47.619
116649312 GT-AG 0 1.000000099473604e-05 7231 rna-XM_008935457.1 21575164 6 69266 76496 Merops nubicus 57421 CAG|GTAAGTGCTG...TTTACTTTAAAC/TTTCCTTTTACT...TCCAG|GTT 0 1 54.082
116649313 GT-AG 0 0.0003897841786195 1625 rna-XM_008935457.1 21575164 7 76590 78214 Merops nubicus 57421 AAG|GTTTGTTCCT...TTAGCCTTATCT/ATGTTTCTAACT...TTAAG|TAT 0 1 64.626
116649314 GT-AG 0 7.328921072272937e-05 2150 rna-XM_008935457.1 21575164 8 78401 80550 Merops nubicus 57421 GCA|GTAAGTATCC...GTTTTTTTACAT/GGTTTTTTTACA...TTCAG|GTG 0 1 85.714

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);