WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 21575135

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
116649080	GT-AG	0	1.000000099473604e-05	2150	rna-XM_008948574.1 21575135	1	44674	46823	Merops nubicus 57421	AAG\|GTAAGAGAGC...GACTCCTTTGGG/GTTGTGCTGATG...TGCAG\|AAC	1	1	9.619
116649081	GT-AG	0	1.000000099473604e-05	455	rna-XM_008948574.1 21575135	2	44109	44563	Merops nubicus 57421	CAG\|GTAAGCTCCT...GAGCCCCAAACC/AGGAGCCCCAAA...TGCAG\|GTG	0	1	19.601
116649082	GT-AG	0	1.000000099473604e-05	1218	rna-XM_008948574.1 21575135	3	42783	44000	Merops nubicus 57421	GTG\|GTAAGGACAG...TTCTTTTTGAGT/TTCTTTTTGAGT...TGTAG\|GTT	0	1	29.401
116649083	GT-AG	0	1.000000099473604e-05	1123	rna-XM_008948574.1 21575135	4	41510	42632	Merops nubicus 57421	AAG\|GTGAGAAGAG...TTAATTTTAATT/TTAATTTTAATT...AACAG\|ATA	0	1	43.013
116649084	GT-AG	1	99.39358862523274	1924	rna-XM_008948574.1 21575135	5	39475	41398	Merops nubicus 57421	CAA\|GTATCCTTTC...CCTTCCTTAACC/CCTTCCTTAACC...CCCAG\|CTG	0	1	53.085
116649085	GT-AG	0	1.000000099473604e-05	857	rna-XM_008948574.1 21575135	6	38537	39393	Merops nubicus 57421	GAG\|GTAAAGGATG...CTTCTCTCCCCT/ACTTCTCTCCCC...CCCAG\|CCG	0	1	60.436
116649086	GT-AG	0	1.000000099473604e-05	791	rna-XM_008948574.1 21575135	7	37560	38350	Merops nubicus 57421	GAG\|GTAATGGGAA...TCAGCTCTGACA/TCAGCTCTGACA...TCCAG\|GTG	0	1	77.314
116649087	GT-AG	0	1.000000099473604e-05	1890	rna-XM_008948574.1 21575135	8	35473	37362	Merops nubicus 57421	AAG\|GTGCTGAAAT...ATGCTCTTCCCT/CAATGGCTCATG...TCCAG\|GGC	2	1	95.191

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);