introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 21550661

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Suggested facets: dinucleotide_pair, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
116462881 GT-AG 0 1.000000099473604e-05 3021 rna-XM_021661579.1 21550661 1 6401157 6404177 Meriones unguiculatus 10047 CCG|GTGGGTGAGA...TTGGCCTTGTTC/CTCTGCCCTACC...CCCAG|GTA 2 1 10.835
116462882 GT-AG 0 1.000000099473604e-05 468 rna-XM_021661579.1 21550661 2 6400417 6400884 Meriones unguiculatus 10047 TTG|GTGAGGGGAC...TGGCTCCTGACG/CAGCACCTCACC...GGCAG|GAG 1 1 28.171
116462883 GT-AG 0 1.000000099473604e-05 370 rna-XM_021661579.1 21550661 3 6399893 6400262 Meriones unguiculatus 10047 CAG|GTGGGCAGGC...GCTCCCTTCCAA/CCAAGACTTATA...GCCAG|GCT 2 1 37.986
116462884 GC-AG 0 1.000000099473604e-05 282 rna-XM_021661579.1 21550661 4 6399343 6399624 Meriones unguiculatus 10047 AAG|GCAAGACCAC...GGCACCTGCCCA/TGGGGTCCCACC...TGCAG|ATC 0 1 55.067
116462885 GT-AG 0 1.000000099473604e-05 180 rna-XM_021661579.1 21550661 5 6399032 6399211 Meriones unguiculatus 10047 GAA|GTGAGCCGAG...TGTGCTTTACCT/GTGTGCTTTACC...GTCAG|AGG 2 1 63.416
116462886 GT-AG 0 1.000000099473604e-05 464 rna-XM_021661579.1 21550661 6 6398417 6398880 Meriones unguiculatus 10047 CAG|GTGAGCAGCG...TGGTATTTAGCC/GTGGTATTTAGC...GACAG|ATC 0 1 73.04
116462887 GT-AG 0 1.000000099473604e-05 88 rna-XM_021661579.1 21550661 7 6398162 6398249 Meriones unguiculatus 10047 GAG|GTGAGGAGAC...CTCCTCTTGCGG/GAGGGGATGACC...CACAG|CAC 2 1 83.684
116462888 GT-AG 0 1.000000099473604e-05 265 rna-XM_021661579.1 21550661 8 6397713 6397977 Meriones unguiculatus 10047 GAG|GTAGGGGTGC...CATCTTTTAATC/CATCTTTTAATC...TGCAG|ATC 0 1 95.411

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);