WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 21325435

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
114869844	GT-AG	1.000000099473604e-05	14696	rna-XM_025349323.1 21325435	1	15474651	15489346	Melanaphis sacchari 742174	GAG\|GTAAGTGTCA...ATTTCTTTCTCG/ACGGTTATTATA...CACAG\|GCG	0	1	4.657
114869845	GT-AG	1.000000099473604e-05	79	rna-XM_025349323.1 21325435	2	15489781	15489859	Melanaphis sacchari 742174	TAG\|GTGCGTATGC...ATTTTTTTATTT/TATTTTTTTATT...CTTAG\|AGC	2	1	16.907
114869846	GT-AG	1.000000099473604e-05	111	rna-XM_025349323.1 21325435	3	15490058	15490168	Melanaphis sacchari 742174	AGG\|GTAAGTGATT...ATTTTTTTATTT/TATTTTTTTATT...TTTAG\|TGT	2	1	22.495
114869847	GT-AG	0.001109750325345	106	rna-XM_025349323.1 21325435	4	15490278	15490383	Melanaphis sacchari 742174	AGG\|GTATGTACCT...ATTATTTTAATA/ATTATTTTAATA...TGCAG\|GAA	0	1	25.572
114869848	GT-AG	1.000000099473604e-05	85	rna-XM_025349323.1 21325435	5	15490618	15490702	Melanaphis sacchari 742174	CAG\|GTGATCAATC...AATCTCTAAAAA/AATTTACTAATT...TACAG\|ATG	0	1	32.176
114869849	GT-AG	3.9635115789146814e-05	113	rna-XM_025349323.1 21325435	6	15491267	15491379	Melanaphis sacchari 742174	GAG\|GTAAATATTA...TTTTTTTTAAAG/TTATGTTTCAAT...TACAG\|ACC	0	1	48.095
114869850	GT-AG	1.000000099473604e-05	116	rna-XM_025349323.1 21325435	7	15491657	15491772	Melanaphis sacchari 742174	GAG\|GTCAGTACGA...CAATTCTTATAA/ATTTTACTGATT...TATAG\|ATC	1	1	55.913
114869851	GT-AG	1.000000099473604e-05	76	rna-XM_025349323.1 21325435	8	15491941	15492016	Melanaphis sacchari 742174	CCG\|GTTAGTATTA...CTTTACTTAACG/TTAAGTTTAATC...TGCAG\|AAT	1	1	60.655

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);