WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 21325390

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
114869101	GT-AG	2.72883829058352e-05	56	rna-XM_025342409.1 21325390	2	24866383	24866438	Melanaphis sacchari 742174	AAG\|GTAACATGGT...ATTGTCATATTT/GTATAATTTACA...TTTAG\|GTG	1	1	72.798
114869102	GT-AG	0.0002651708206749	721	rna-XM_025342409.1 21325390	3	24865544	24866264	Melanaphis sacchari 742174	ATT\|GTAAGTATAT...AAGTCTTTAATT/AAGTCTTTAATT...TACAG\|AGC	2	1	75.204
114869103	GT-AG	9.268844139070256e-05	372	rna-XM_025342409.1 21325390	4	24865092	24865463	Melanaphis sacchari 742174	AAG\|GTAAGTTTTT...CTATTTTTAATT/CTATTTTTAATT...TCTAG\|ATG	1	1	76.835
114869104	GT-AG	3.062762172678497e-05	1229	rna-XM_025342409.1 21325390	5	24863599	24864827	Melanaphis sacchari 742174	TCG\|GTAATGTTAA...AATTTTTTAATT/AATTTTTTAATT...TATAG\|CTG	1	1	82.219
114869105	GT-AG	1.000000099473604e-05	71	rna-XM_025342409.1 21325390	6	24863305	24863375	Melanaphis sacchari 742174	CAG\|GTAAATTATA...TGTCTATTAAAT/ATTAAATTAATT...CTCAG\|GTT	2	1	86.766
114869106	GT-AG	0.0037828827404303	151	rna-XM_025342409.1 21325390	7	24862924	24863074	Melanaphis sacchari 742174	AAG\|GTATATTATT...TATTCTATATTT/TCTATATTTATA...CTTAG\|ATT	1	1	91.456
114875302	GT-AG	0.0001742792630822	1418	rna-XM_025342409.1 21325390	1	24869884	24871301	Melanaphis sacchari 742174	CTC\|GTAAGTATTA...AATTTTTTATTT/TAATTTTTTATT...TTTAG\|TTG		0	2.916

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);