WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2121797

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
11621148	GT-AG	1.3653091123225423e-05	47	rna-XM_009823071.1 2121797	1	1140149	1140195	Aphanomyces astaci 112090	CAG\|GTCTGTCTGA...CATCGTTTGACT/CATCGTTTGACT...TGAAG\|GTG	0	1	23.474
11621149	GT-AG	5.849735007722117e-05	645	rna-XM_009823071.1 2121797	2	1139282	1139926	Aphanomyces astaci 112090	CAG\|GTAGGCATCG...AATACTTTACAA/GAATACTTTACA...GTTAG\|TTT	0	1	29.264
11621150	GT-AG	0.0103007485100374	89	rna-XM_009823071.1 2121797	3	1139031	1139119	Aphanomyces astaci 112090	AAA\|GTAACCACAG...AAATCCTCGATT/CCTCGATTGAAT...TGTAG\|GTG	0	1	33.49
11621151	GT-AG	0.0392421802566177	599	rna-XM_009823071.1 2121797	4	1138060	1138658	Aphanomyces astaci 112090	AAG\|GTACCCCATA...TGTATTTTGAAC/TGTATTTTGAAC...TCTAG\|GGC	0	1	43.192
11621152	GT-AG	0.0001415867422128	822	rna-XM_009823071.1 2121797	5	1136656	1137477	Aphanomyces astaci 112090	CAG\|GTATGTATTG...CCTGCTTTCGTC/ATATATTTCATG...TGTAG\|ATT	0	1	58.372
11621153	GT-AG	1.000000099473604e-05	270	rna-XM_009823071.1 2121797	6	1136176	1136445	Aphanomyces astaci 112090	CAG\|GTATGATCAA...AATATTGTAAAT/AATATTGTAAAT...TGTAG\|TCG	0	1	63.85
11621154	GT-AG	0.0002664659551098	310	rna-XM_009823071.1 2121797	7	1135696	1136005	Aphanomyces astaci 112090	ACG\|GTATGTCCCC...TCGTCGCTAACA/TCGTCGCTAACA...ATTAG\|ACG	2	1	68.284
11621155	GT-AG	0.007255623452009	69	rna-XM_009823071.1 2121797	8	1134814	1134882	Aphanomyces astaci 112090	ACG\|GTATACTAAA...TGATGGTTGACA/CCTCTACTCAAA...TGTAG\|CGC	2	1	89.489

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);