introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 2107406
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
11508042 | GT-AG | 0 | 1.2286713091120489e-05 | 2461 | rna-XM_009873354.1 2107406 | 1 | 45937 | 48397 | Apaloderma vittatum 57397 | AGG|GTACTTGTTT...TGGTGTTTAAGG/AATATACTCATG...TGCAG|AAA | 1 | 1 | 12.252 |
11508043 | GT-AG | 0 | 0.0001767336106959 | 1892 | rna-XM_009873354.1 2107406 | 2 | 43943 | 45834 | Apaloderma vittatum 57397 | CAG|GTAAGCTTGC...TTGATTTTGACT/TTGATTTTGACT...TTCAG|GAA | 1 | 1 | 21.441 |
11508044 | GT-AG | 0 | 1.000000099473604e-05 | 2032 | rna-XM_009873354.1 2107406 | 3 | 41801 | 43832 | Apaloderma vittatum 57397 | ACT|GTAAGGACTT...AAATCTTTGAAA/TGGAAATTAATC...CCTAG|ATT | 0 | 1 | 31.351 |
11508045 | GT-AG | 0 | 1.000000099473604e-05 | 445 | rna-XM_009873354.1 2107406 | 4 | 41261 | 41705 | Apaloderma vittatum 57397 | GAA|GTAATGATGT...TCTTTTTTATTT/TTTTTATTTATT...TCCAG|GTT | 2 | 1 | 39.91 |
11508046 | GT-AG | 0 | 1.000000099473604e-05 | 1180 | rna-XM_009873354.1 2107406 | 5 | 39960 | 41139 | Apaloderma vittatum 57397 | AAG|GTGAGATACA...TCCTCCTTGGAT/TTAAAATTCACT...CTCAG|CCG | 0 | 1 | 50.811 |
11508047 | GT-AG | 0 | 1.000000099473604e-05 | 2814 | rna-XM_009873354.1 2107406 | 6 | 36963 | 39776 | Apaloderma vittatum 57397 | GAG|GTAATGAGGG...AGAATTTTAATC/AGAATTTTAATC...TATAG|CCC | 0 | 1 | 67.297 |
11508048 | GT-AG | 0 | 1.000000099473604e-05 | 1790 | rna-XM_009873354.1 2107406 | 7 | 35040 | 36829 | Apaloderma vittatum 57397 | AAG|GTAAATGCTT...AACCCTTTATTA/TTATTCTTCATA...TTTAG|AAA | 1 | 1 | 79.279 |
11508049 | GT-AG | 0 | 1.000000099473604e-05 | 1320 | rna-XM_009873354.1 2107406 | 8 | 33571 | 34890 | Apaloderma vittatum 57397 | AAG|GTAAGCAACT...GTATTTTTACAT/TGTATTTTTACA...TTTAG|GTG | 0 | 1 | 92.703 |
11508050 | GT-AG | 0 | 1.000000099473604e-05 | 932 | rna-XM_009873354.1 2107406 | 9 | 32570 | 33501 | Apaloderma vittatum 57397 | GAG|GTAAAGACTT...CTGTCTGTAGTT/GAGAAACTAATA...TTCAG|TTG | 0 | 1 | 98.919 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);