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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 2107406

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
11508042 GT-AG 0 1.2286713091120489e-05 2461 rna-XM_009873354.1 2107406 1 45937 48397 Apaloderma vittatum 57397 AGG|GTACTTGTTT...TGGTGTTTAAGG/AATATACTCATG...TGCAG|AAA 1 1 12.252
11508043 GT-AG 0 0.0001767336106959 1892 rna-XM_009873354.1 2107406 2 43943 45834 Apaloderma vittatum 57397 CAG|GTAAGCTTGC...TTGATTTTGACT/TTGATTTTGACT...TTCAG|GAA 1 1 21.441
11508044 GT-AG 0 1.000000099473604e-05 2032 rna-XM_009873354.1 2107406 3 41801 43832 Apaloderma vittatum 57397 ACT|GTAAGGACTT...AAATCTTTGAAA/TGGAAATTAATC...CCTAG|ATT 0 1 31.351
11508045 GT-AG 0 1.000000099473604e-05 445 rna-XM_009873354.1 2107406 4 41261 41705 Apaloderma vittatum 57397 GAA|GTAATGATGT...TCTTTTTTATTT/TTTTTATTTATT...TCCAG|GTT 2 1 39.91
11508046 GT-AG 0 1.000000099473604e-05 1180 rna-XM_009873354.1 2107406 5 39960 41139 Apaloderma vittatum 57397 AAG|GTGAGATACA...TCCTCCTTGGAT/TTAAAATTCACT...CTCAG|CCG 0 1 50.811
11508047 GT-AG 0 1.000000099473604e-05 2814 rna-XM_009873354.1 2107406 6 36963 39776 Apaloderma vittatum 57397 GAG|GTAATGAGGG...AGAATTTTAATC/AGAATTTTAATC...TATAG|CCC 0 1 67.297
11508048 GT-AG 0 1.000000099473604e-05 1790 rna-XM_009873354.1 2107406 7 35040 36829 Apaloderma vittatum 57397 AAG|GTAAATGCTT...AACCCTTTATTA/TTATTCTTCATA...TTTAG|AAA 1 1 79.279
11508049 GT-AG 0 1.000000099473604e-05 1320 rna-XM_009873354.1 2107406 8 33571 34890 Apaloderma vittatum 57397 AAG|GTAAGCAACT...GTATTTTTACAT/TGTATTTTTACA...TTTAG|GTG 0 1 92.703
11508050 GT-AG 0 1.000000099473604e-05 932 rna-XM_009873354.1 2107406 9 32570 33501 Apaloderma vittatum 57397 GAG|GTAAAGACTT...CTGTCTGTAGTT/GAGAAACTAATA...TTCAG|TTG 0 1 98.919

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.292ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)