introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 2107393
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
11507899 | GT-AG | 0 | 0.0055037382009088 | 1393 | rna-XM_009871746.1 2107393 | 1 | 95618 | 97010 | Apaloderma vittatum 57397 | AAA|GTATGTATGA...GTTCTCCTAGCA/CCTGTGCATATT...ACCAG|GAC | 0 | 1 | 8.502 |
11507900 | GT-AG | 0 | 1.000000099473604e-05 | 942 | rna-XM_009871746.1 2107393 | 2 | 97166 | 98107 | Apaloderma vittatum 57397 | TCG|GTGAGTCAGC...ATTTCCTTTACT/ATTTCCTTTACT...TATAG|GTT | 2 | 1 | 18.961 |
11507901 | GT-AG | 0 | 1.000000099473604e-05 | 10871 | rna-XM_009871746.1 2107393 | 3 | 98257 | 109127 | Apaloderma vittatum 57397 | TGG|GTGAGTAAAC...TTGTCCTTATTT/CTTGTCCTTATT...TGCAG|GCA | 1 | 1 | 29.015 |
11507902 | GT-AG | 0 | 1.000000099473604e-05 | 2155 | rna-XM_009871746.1 2107393 | 4 | 109253 | 111407 | Apaloderma vittatum 57397 | AAG|GTGAGTACTT...AGATGCTTATTG/CAGATGCTTATT...CACAG|GGC | 0 | 1 | 37.449 |
11507903 | GT-AG | 0 | 1.000000099473604e-05 | 9872 | rna-XM_009871746.1 2107393 | 5 | 111502 | 121373 | Apaloderma vittatum 57397 | ATA|GTGAGTATTG...ACTTTGTTAATG/ACTTTGTTAATG...TAAAG|ATA | 1 | 1 | 43.792 |
11507904 | GT-AG | 0 | 0.0002801567677551 | 7180 | rna-XM_009871746.1 2107393 | 6 | 121480 | 128659 | Apaloderma vittatum 57397 | CAG|GTATGGTTGT...TCATCCATGATT/TTGTTGTTCATC...CACAG|CAT | 2 | 1 | 50.945 |
11507905 | GT-AG | 0 | 1.000000099473604e-05 | 2129 | rna-XM_009871746.1 2107393 | 7 | 128880 | 131008 | Apaloderma vittatum 57397 | AAG|GTAAAAGAAA...CATGCTTTGTTT/TCAAAGCTCATT...TTAAG|GAC | 0 | 1 | 65.789 |
11507906 | GT-AG | 0 | 1.000000099473604e-05 | 12465 | rna-XM_009871746.1 2107393 | 8 | 131136 | 143600 | Apaloderma vittatum 57397 | AAG|GTAAGCCACC...TGATCTTTGAAC/TTTGAACTGACT...TTCAG|GGC | 1 | 1 | 74.359 |
11507907 | GT-AG | 0 | 1.000000099473604e-05 | 975 | rna-XM_009871746.1 2107393 | 9 | 143737 | 144711 | Apaloderma vittatum 57397 | AGG|GTAAGTACTG...TTCTTCTTCTCT/AGATAATTTATC...CTTAG|GGC | 2 | 1 | 83.536 |
11507908 | GT-AG | 0 | 1.000000099473604e-05 | 2324 | rna-XM_009871746.1 2107393 | 10 | 144842 | 147165 | Apaloderma vittatum 57397 | ACG|GTAAGCACAG...TTCATTTCATTT/CTTCATTTCATT...TACAG|GTT | 0 | 1 | 92.308 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);