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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 2107393

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
11507899 GT-AG 0 0.0055037382009088 1393 rna-XM_009871746.1 2107393 1 95618 97010 Apaloderma vittatum 57397 AAA|GTATGTATGA...GTTCTCCTAGCA/CCTGTGCATATT...ACCAG|GAC 0 1 8.502
11507900 GT-AG 0 1.000000099473604e-05 942 rna-XM_009871746.1 2107393 2 97166 98107 Apaloderma vittatum 57397 TCG|GTGAGTCAGC...ATTTCCTTTACT/ATTTCCTTTACT...TATAG|GTT 2 1 18.961
11507901 GT-AG 0 1.000000099473604e-05 10871 rna-XM_009871746.1 2107393 3 98257 109127 Apaloderma vittatum 57397 TGG|GTGAGTAAAC...TTGTCCTTATTT/CTTGTCCTTATT...TGCAG|GCA 1 1 29.015
11507902 GT-AG 0 1.000000099473604e-05 2155 rna-XM_009871746.1 2107393 4 109253 111407 Apaloderma vittatum 57397 AAG|GTGAGTACTT...AGATGCTTATTG/CAGATGCTTATT...CACAG|GGC 0 1 37.449
11507903 GT-AG 0 1.000000099473604e-05 9872 rna-XM_009871746.1 2107393 5 111502 121373 Apaloderma vittatum 57397 ATA|GTGAGTATTG...ACTTTGTTAATG/ACTTTGTTAATG...TAAAG|ATA 1 1 43.792
11507904 GT-AG 0 0.0002801567677551 7180 rna-XM_009871746.1 2107393 6 121480 128659 Apaloderma vittatum 57397 CAG|GTATGGTTGT...TCATCCATGATT/TTGTTGTTCATC...CACAG|CAT 2 1 50.945
11507905 GT-AG 0 1.000000099473604e-05 2129 rna-XM_009871746.1 2107393 7 128880 131008 Apaloderma vittatum 57397 AAG|GTAAAAGAAA...CATGCTTTGTTT/TCAAAGCTCATT...TTAAG|GAC 0 1 65.789
11507906 GT-AG 0 1.000000099473604e-05 12465 rna-XM_009871746.1 2107393 8 131136 143600 Apaloderma vittatum 57397 AAG|GTAAGCCACC...TGATCTTTGAAC/TTTGAACTGACT...TTCAG|GGC 1 1 74.359
11507907 GT-AG 0 1.000000099473604e-05 975 rna-XM_009871746.1 2107393 9 143737 144711 Apaloderma vittatum 57397 AGG|GTAAGTACTG...TTCTTCTTCTCT/AGATAATTTATC...CTTAG|GGC 2 1 83.536
11507908 GT-AG 0 1.000000099473604e-05 2324 rna-XM_009871746.1 2107393 10 144842 147165 Apaloderma vittatum 57397 ACG|GTAAGCACAG...TTCATTTCATTT/CTTCATTTCATT...TACAG|GTT 0 1 92.308

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 31.546ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)