introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 2107388
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
11507845 | GT-AG | 0 | 0.0007779180375539 | 1285 | rna-XM_009871136.1 2107388 | 1 | 29788 | 31072 | Apaloderma vittatum 57397 | CTG|GTGTGCTTAC...CTGTTTTTATTT/GCTGTTTTTATT...TACAG|GAT | 2 | 1 | 3.055 |
11507846 | GT-AG | 0 | 1.000000099473604e-05 | 4737 | rna-XM_009871136.1 2107388 | 2 | 24941 | 29677 | Apaloderma vittatum 57397 | ATC|GTGAGTAGAT...TTTAGCTTAATT/TTTAGCTTAATT...CTTAG|AGC | 1 | 1 | 15.981 |
11507847 | GT-AG | 0 | 1.000000099473604e-05 | 3211 | rna-XM_009871136.1 2107388 | 3 | 21526 | 24736 | Apaloderma vittatum 57397 | GCT|GTGAGTTTAC...GCTGTTTTCCAT/CTGTTTTCCATC...TTTAG|CAT | 1 | 1 | 39.953 |
11507848 | GT-AG | 0 | 1.000000099473604e-05 | 2434 | rna-XM_009871136.1 2107388 | 4 | 19015 | 21448 | Apaloderma vittatum 57397 | AGA|GTGAGTAATC...ATTACTTTAAAT/CATATTATTACT...TTCAG|CTT | 0 | 1 | 49.001 |
11507849 | GT-AG | 0 | 0.0002514964756573 | 5942 | rna-XM_009871136.1 2107388 | 5 | 12993 | 18934 | Apaloderma vittatum 57397 | AGA|GTAAGTTAAG...TTGTCTTTAATT/CATTTTCTAATT...AACAG|GAT | 2 | 1 | 58.402 |
11507850 | GT-AG | 0 | 1.000000099473604e-05 | 5123 | rna-XM_009871136.1 2107388 | 6 | 7740 | 12862 | Apaloderma vittatum 57397 | CAG|GTAAAAAAAG...ATATTTTTATTT/TATATTTTTATT...TGTAG|AGC | 0 | 1 | 73.678 |
11507851 | GT-AG | 0 | 1.000000099473604e-05 | 2089 | rna-XM_009871136.1 2107388 | 7 | 5501 | 7589 | Apaloderma vittatum 57397 | GAG|GTAGGTGTTC...TGCTCTTCAATT/TTGCTCTTCAAT...AAAAG|TTT | 0 | 1 | 91.304 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);