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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

13 rows where transcript_id = 2107365

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
11507696 GT-AG 0 0.000373532957363 366 rna-XM_009868199.1 2107365 1 188 553 Apaloderma vittatum 57397 CGG|GTAACGTCTT...TTTATTTGAATT/CTTTATTTGAAT...CATAG|ACC 2 1 8.347
11507697 GT-AG 0 1.000000099473604e-05 460 rna-XM_009868199.1 2107365 2 700 1159 Apaloderma vittatum 57397 CAG|GTAGAGAAGG...ACCCCTTTATTA/CCTTTATTAATT...TGCAG|ATT 1 1 16.209
11507698 GT-AG 0 1.000000099473604e-05 838 rna-XM_009868199.1 2107365 3 1366 2203 Apaloderma vittatum 57397 CAG|GTTATAGAAC...AATTTTTTACTT/TAATTTTTTACT...ATCAG|GAA 0 1 27.302
11507699 GT-AG 0 1.000000099473604e-05 1851 rna-XM_009868199.1 2107365 4 2351 4201 Apaloderma vittatum 57397 TCG|GTAAGAATCG...GCATTTTTGTTG/TATATATTGAAG...TAAAG|GAA 0 1 35.218
11507700 GT-AG 0 0.0151874050465939 4315 rna-XM_009868199.1 2107365 5 4391 8705 Apaloderma vittatum 57397 AAG|GTAACTTTAG...ATCTTTTTAATC/ATGATACTCATC...TTTAG|GTA 0 1 45.396
11507701 GT-AG 0 1.000000099473604e-05 6673 rna-XM_009868199.1 2107365 6 8776 15448 Apaloderma vittatum 57397 AAG|GTAGAGTTGA...ATTTTTTTATAA/TATTTTTTTATA...TACAG|AAG 1 1 49.165
11507702 GT-AG 0 1.000000099473604e-05 922 rna-XM_009868199.1 2107365 7 15561 16482 Apaloderma vittatum 57397 AAG|GTAAAACTGA...GCTATTTTATTG/TTTATTGTAATT...TCCAG|AGA 2 1 55.197
11507703 GT-AG 0 0.0353162801937362 2170 rna-XM_009868199.1 2107365 8 16535 18704 Apaloderma vittatum 57397 AAG|GTAACTCTTG...ATTTTCTTAATA/TATTTTCTTAAT...ATCAG|TTT 0 1 57.997
11507704 GT-AG 0 1.000000099473604e-05 341 rna-XM_009868199.1 2107365 9 18807 19147 Apaloderma vittatum 57397 CAG|GTGAGTACTT...CACTCATTAGTA/ATGCCACTCATT...TGCAG|CCT 0 1 63.489
11507705 GT-AG 0 1.000000099473604e-05 223 rna-XM_009868199.1 2107365 10 19314 19536 Apaloderma vittatum 57397 CTG|GTTAGTCATG...ACATTATTAATT/ACATTATTAATT...TTTAG|TTT 1 1 72.429
11507706 GT-AG 0 1.000000099473604e-05 1031 rna-XM_009868199.1 2107365 11 19620 20650 Apaloderma vittatum 57397 CAG|GTGAGTTTAC...TTTGTATTGATG/TTTGTATTGATG...TAAAG|AAC 0 1 76.898
11507707 GT-AG 0 0.0034298773119162 912 rna-XM_009868199.1 2107365 12 20779 21690 Apaloderma vittatum 57397 TAT|GTAAGTTTTG...CTTTTCTTAAAC/ATTGTATTAACT...CAAAG|TGA 2 1 83.791
11507708 GT-AG 0 2.025494857984042e-05 796 rna-XM_009868199.1 2107365 13 21791 22586 Apaloderma vittatum 57397 CCG|GTAGGTCTTT...CAATATTTAATA/GAGTATCTAACT...GACAG|ATC 0 1 89.176

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 32.145ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)