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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

16 rows where transcript_id = 2107351

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
11507527 GT-AG 0 1.000000099473604e-05 1502 rna-XM_009866386.1 2107351 1 54573 56074 Apaloderma vittatum 57397 AAT|GTGAGTAGGT...TATTTCTGATAT/GTATTTCTGATA...TTAAG|AGG 2 1 2.632
11507528 GT-AG 0 8.557892598588525e-05 2835 rna-XM_009866386.1 2107351 2 51615 54449 Apaloderma vittatum 57397 TTT|GTAAGTATGG...TAAAACTTAACG/TTAAAACTTAAC...CTTAG|TCT 2 1 9.237
11507529 GT-AG 0 0.0002847499994843 2724 rna-XM_009866386.1 2107351 3 48702 51425 Apaloderma vittatum 57397 CCG|GTAAACTTGA...ATTTTATTACAG/CCAGAGTTCATT...TTTAG|TGA 2 1 19.388
11507530 GT-AG 0 0.0006691039742072 1711 rna-XM_009866386.1 2107351 4 46876 48586 Apaloderma vittatum 57397 TCA|GTAAGTTCAT...TTTTCTTTGAAT/TGAATTCTGATA...CAAAG|GTC 0 1 25.564
11507531 GT-AG 0 3.984654923919061e-05 1263 rna-XM_009866386.1 2107351 5 45474 46736 Apaloderma vittatum 57397 AAG|GTATGACTTC...ATATGCTTACCA/CATATGCTTACC...TCCAG|GGT 1 1 33.029
11507532 GT-AG 0 1.000000099473604e-05 3790 rna-XM_009866386.1 2107351 6 41571 45360 Apaloderma vittatum 57397 CAG|GTACAGCGCT...TAACTCCTGACC/TAACTCCTGACC...TGTAG|ATC 0 1 39.098
11507533 GT-AG 0 1.000000099473604e-05 679 rna-XM_009866386.1 2107351 7 40829 41507 Apaloderma vittatum 57397 GAG|GTAAGGTGAA...ACTCTCTAGACT/TGAGAACTTACA...TACAG|AAT 0 1 42.481
11507534 GT-AG 0 0.0001033493917514 1393 rna-XM_009866386.1 2107351 8 39298 40690 Apaloderma vittatum 57397 GAG|GTAATTTTTT...TCTTTCTTCAAG/TCTTTCTTCAAG...CTCAG|TGT 0 1 49.893
11507535 GT-AG 0 1.000000099473604e-05 1256 rna-XM_009866386.1 2107351 9 37951 39206 Apaloderma vittatum 57397 CAG|GTAAGATAGT...TTTTTCTTTGTA/TATGTAATCACT...CTTAG|CGG 1 1 54.78
11507536 GT-AG 0 1.000000099473604e-05 4752 rna-XM_009866386.1 2107351 10 33065 37816 Apaloderma vittatum 57397 CAG|GTGAGTTGGA...TTTTTCTGTGCT/TCTGTGCTCAAA...TGCAG|TGT 0 1 61.976
11507537 GT-AG 0 2.164995865012214e-05 4124 rna-XM_009866386.1 2107351 11 28744 32867 Apaloderma vittatum 57397 CAA|GTAAGTTGGA...TTGTCCTTCTCA/TTTGTATTCATT...TGCAG|CAA 2 1 72.556
11507538 GT-AG 0 0.0001737645164884 1476 rna-XM_009866386.1 2107351 12 27174 28649 Apaloderma vittatum 57397 TCT|GTAAGCATAT...CGTTTTTGGACC/TGGATATTGACA...TGTAG|GTT 0 1 77.605
11507539 GT-AG 0 0.0002117542527507 8221 rna-XM_009866386.1 2107351 13 18883 27103 Apaloderma vittatum 57397 ACG|GTAAATTACT...TTTGCCTTGAAA/TATGATTTTATT...TTCAG|TGA 1 1 81.364
11507540 GT-AG 0 1.000000099473604e-05 361 rna-XM_009866386.1 2107351 14 18412 18772 Apaloderma vittatum 57397 AAG|GTAATGTTAA...ATATTTTTAATA/ATATTTTTAATA...TCCAG|CTG 0 1 87.272
11507541 GT-AG 0 1.000000099473604e-05 2026 rna-XM_009866386.1 2107351 15 16289 18314 Apaloderma vittatum 57397 AAG|GTAGGATGGC...ATCTTTTTATTT/TATCTTTTTATT...TTTAG|ACA 1 1 92.481
11507542 GT-AG 0 0.0262284976263196 5660 rna-XM_009866386.1 2107351 16 10561 16220 Apaloderma vittatum 57397 AAG|GTATCGTGTT...AGGATCTGAGTT/AGTTTTGTCAGT...TTCAG|TTC 0 1 96.133

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.437ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)