WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2107345

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
11507464	GT-AG	1.000000099473604e-05	776	rna-XM_009865553.1 2107345	1	1117	1892	Apaloderma vittatum 57397	CAA\|GTAAGTGCAT...TTTTTCTTCCAC/CTGACCATCATT...ACCAG\|TGG	1	1	7.619
11507465	GT-AG	1.000000099473604e-05	1245	rna-XM_009865553.1 2107345	2	2045	3289	Apaloderma vittatum 57397	CAG\|GTGAGAGAGG...TTGCTTTTGATT/TTGCTTTTGATT...TTTAG\|GTT	0	1	20.779
11507466	GT-AG	1.000000099473604e-05	680	rna-XM_009865553.1 2107345	3	3394	4073	Apaloderma vittatum 57397	AAA\|GTAAGTGCTG...CAACTCTTGAGC/CAACTCTTGAGC...TACAG\|ACA	2	1	29.784
11507467	GT-AG	1.000000099473604e-05	3143	rna-XM_009865553.1 2107345	4	4228	7370	Apaloderma vittatum 57397	AAG\|GTTGTCTAAC...TTTTCTTTTTCT/CTTTTTCTGAGA...TCTAG\|GTT	0	1	43.117
11507468	GT-AG	1.000000099473604e-05	383	rna-XM_009865553.1 2107345	5	7522	7904	Apaloderma vittatum 57397	CAG\|GTAAAATGCA...TCCTTCTTGACT/TAAATACTCAAT...CCTAG\|GAC	1	1	56.19
11507469	GT-AG	0.0002775270972749	1331	rna-XM_009865553.1 2107345	6	8076	9406	Apaloderma vittatum 57397	ATG\|GTACATGTTT...TCAACCTTAGAG/TCTCGTCTAACC...CTAAG\|GTT	1	1	70.996
11507470	GT-AG	2.1483478681778678e-05	364	rna-XM_009865553.1 2107345	7	9523	9886	Apaloderma vittatum 57397	AAG\|GTATGAGTTT...TTTCTCTTCATT/TTTCTCTTCATT...TTCAG\|GCA	0	1	81.039
11507471	GT-AG	2.205424891710817e-05	480	rna-XM_009865553.1 2107345	8	9972	10451	Apaloderma vittatum 57397	AGA\|GTAAGTTCAA...TTTTGTTTATTC/TTTTTGTTTATT...TGCAG\|CCC	1	1	88.398

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);