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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

17 rows where transcript_id = 2107333

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
11507236 GT-AG 0 1.000000099473604e-05 9313 rna-XM_009879294.1 2107333 1 24951 34263 Apaloderma vittatum 57397 CCT|GTAAGTACGA...TGGCTCTGAGCT/GTGGCTCTGAGC...TATAG|GCT 0 1 9.326
11507237 GT-AG 0 0.000384635705437 15669 rna-XM_009879294.1 2107333 2 34385 50053 Apaloderma vittatum 57397 TAC|GTAAGTATAA...TCTCCCTTAATT/TCTCCCTTAATT...AACAG|AGG 1 1 16.292
11507238 GT-AG 0 1.000000099473604e-05 7030 rna-XM_009879294.1 2107333 3 50175 57204 Apaloderma vittatum 57397 AAG|GTAAGAGAAA...AAATTCTTCATC/AAATTCTTCATC...TTTAG|GAC 2 1 23.258
11507239 GT-AG 0 0.0001259451010178 1799 rna-XM_009879294.1 2107333 4 57267 59065 Apaloderma vittatum 57397 CAG|GTAATCTTGC...ATTATCCTGATA/CTGATACTTACT...TATAG|ATA 1 1 26.828
11507240 GT-AG 0 1.000000099473604e-05 462 rna-XM_009879294.1 2107333 5 59199 59660 Apaloderma vittatum 57397 AAG|GTAAAACTCT...TTGCTTTTATCC/GTTGCTTTTATC...TTCAG|GTT 2 1 34.485
11507241 GT-AG 0 1.000000099473604e-05 2040 rna-XM_009879294.1 2107333 6 59687 61726 Apaloderma vittatum 57397 TAA|GTAAGTACTC...TGTTTTTTCTCC/CTAATTCTAACA...TTTAG|AGA 1 1 35.982
11507242 GT-AG 0 0.0032098588637393 2526 rna-XM_009879294.1 2107333 7 61819 64344 Apaloderma vittatum 57397 ATT|GTAAGTTATC...TTCTTCTTAATC/TTTCTTCTTAAT...TGCAG|ATT 0 1 41.278
11507243 GT-AG 0 0.0015873226386812 991 rna-XM_009879294.1 2107333 8 64437 65427 Apaloderma vittatum 57397 CAG|GTATTTACAT...CTCTCTTTAACT/CTCTCTTTAACT...TCTAG|GGG 2 1 46.575
11507244 GT-AG 0 1.4464123215154636e-05 819 rna-XM_009879294.1 2107333 9 65477 66295 Apaloderma vittatum 57397 GTG|GTAGGTCTTT...TCCGTTTTAAGT/TCCGTTTTAAGT...CCAAG|GAA 0 1 49.396
11507245 GT-AG 0 5.517772259439898e-05 1503 rna-XM_009879294.1 2107333 10 66368 67870 Apaloderma vittatum 57397 CAG|GTACTGTGCT...TTGGTTTTAATT/TTGGTTTTAATT...TGCAG|AAC 0 1 53.541
11507246 GT-AG 0 6.144713640000839e-05 101 rna-XM_009879294.1 2107333 11 67915 68015 Apaloderma vittatum 57397 AAA|GTAAGTTATC...GTTTTCTTTTTT/ACACTAGTAATA...TTCAG|CTT 2 1 56.074
11507247 GT-AG 0 0.0001319135389972 1196 rna-XM_009879294.1 2107333 12 68126 69321 Apaloderma vittatum 57397 TGG|GTAAACACAA...GATTTCTTGATA/GATTTCTTGATA...TTCAG|GAC 1 1 62.406
11507248 GT-AG 0 1.000000099473604e-05 3880 rna-XM_009879294.1 2107333 13 69477 73356 Apaloderma vittatum 57397 CGG|GTAAGGGTAA...GTTTTCTTTTTC/CAGCTGTTCAAA...TGCAG|CTT 0 1 71.33
11507249 GT-AG 0 1.000000099473604e-05 461 rna-XM_009879294.1 2107333 14 73505 73965 Apaloderma vittatum 57397 CAG|GTATGACGCA...TTTCTCATGATT/CTTTTTCTCAAA...TTCAG|TGT 1 1 79.85
11507250 GT-AG 0 1.000000099473604e-05 1064 rna-XM_009879294.1 2107333 15 74060 75123 Apaloderma vittatum 57397 AAA|GTGAGTCATT...TGTTTCATAACA/CTTTGTTTCATA...TTCAG|TTA 2 1 85.262
11507251 GT-AG 0 0.0001436647569386 1751 rna-XM_009879294.1 2107333 16 75209 76959 Apaloderma vittatum 57397 AAG|GTATGTCTGT...GTGGTTTTGTTT/TCTTCTGTAAGA...TTTAG|TAT 0 1 90.155
11507252 GT-AG 0 1.000000099473604e-05 946 rna-XM_009879294.1 2107333 17 77029 77974 Apaloderma vittatum 57397 AAA|GTGAGTAGCT...TCTTTTTTCATT/TCTTTTTTCATT...TTTAG|CCT 0 1 94.128

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.93ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)