WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 20781836

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
111342133	GT-AG	0.0054295627684832	586	rna-XM_021766477.2 20781836	1	31910310	31910895	Manihot esculenta 3983	CAG\|GTTTCTCTCT...CTATATTTAATG/CTATATTTAATG...TGTAG\|GCA	0	1	1.573
111342134	GT-AG	1.000000099473604e-05	377	rna-XM_021766477.2 20781836	2	31910983	31911359	Manihot esculenta 3983	ACG\|GTAGGTACAT...GAAGTTTTAATT/TTTGGTCTTATA...TTCAG\|GAT	0	1	4.255
111342135	GT-AG	0.0148203236092497	100	rna-XM_021766477.2 20781836	3	31911450	31911549	Manihot esculenta 3983	ACT\|GTATGTAATC...GATCCTTTACTA/TTTGTATTAACA...CACAG\|GTA	0	1	7.031
111342136	GT-AG	0.0140854167310245	107	rna-XM_021766477.2 20781836	4	31911637	31911743	Manihot esculenta 3983	CTG\|GTAACTTCTT...ATTTCTTCGATA/CATGGTTTCATT...CATAG\|ATA	0	1	9.713
111342137	GT-AG	1.000000099473604e-05	494	rna-XM_021766477.2 20781836	5	31911939	31912432	Manihot esculenta 3983	CAG\|GTAATGAGCT...GTTGTCTTGTAT/ATGTTACTGATC...TGAAG\|GTG	0	1	15.726
111342138	GT-AG	1.000000099473604e-05	245	rna-XM_021766477.2 20781836	6	31914476	31914720	Manihot esculenta 3983	GAG\|GTAATAGCTG...ATCTTCTCATTT/AATCTTCTCATT...TGTAG\|GCT	0	1	78.723
111342139	GT-AG	0.0001582830657875	259	rna-XM_021766477.2 20781836	7	31914868	31915126	Manihot esculenta 3983	AGG\|GTAATTTATT...AAGTTTTTAATA/AAGTTTTTAATA...TGCAG\|CTT	0	1	83.256
111342140	GT-AG	2.3855468951161897e-05	94	rna-XM_021766477.2 20781836	8	31915543	31915636	Manihot esculenta 3983	TAG\|GTAATTCTTA...GCATTTTTAAAC/TCCAAACTCATA...TGCAG\|CCG	2	1	96.084

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);