WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 20781816

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
111341938	GT-AG	3.279279543025835e-05	424	rna-XM_021774180.2 20781816	1	26210924	26211347	Manihot esculenta 3983	CAG\|GTACCAAATG...TTTCTGGTGATA/ACATGACTGAGT...TATAG\|GTT	0	1	2.257
111341939	GT-AG	1.000000099473604e-05	84	rna-XM_021774180.2 20781816	2	26210639	26210722	Manihot esculenta 3983	GCT\|GTAAGAAACT...TAAATCTTATCC/TTAAATCTTATC...TGTAG\|GGA	0	1	8.073
111341940	GT-AG	1.000000099473604e-05	158	rna-XM_021774180.2 20781816	3	26210358	26210515	Manihot esculenta 3983	CAT\|GTGAGTCCCT...ATTTCATTGATT/ATTTCATTGATT...AACAG\|GTT	0	1	11.632
111341941	GT-AG	0.0001741906336915	120	rna-XM_021774180.2 20781816	4	26210200	26210319	Manihot esculenta 3983	AAG\|GTAACAGTGA...CTGTTCTTGATT/CTGTTCTTGATT...TACAG\|TGA	2	1	12.731
111341942	GT-AG	1.004823568732072e-05	231	rna-XM_021774180.2 20781816	5	26209728	26209958	Manihot esculenta 3983	GAA\|GTAAGTTCCC...AAAATATTGATG/AAAATATTGATG...TGCAG\|GTT	0	1	19.705
111341943	GT-AG	1.000000099473604e-05	497	rna-XM_021774180.2 20781816	6	26206984	26207480	Manihot esculenta 3983	GAG\|GTAAATCTGG...ATGATTTTGTTT/TAAGTACTCATT...GACAG\|GGA	0	1	84.722
111341944	GT-AG	1.000000099473604e-05	371	rna-XM_021774180.2 20781816	7	26206457	26206827	Manihot esculenta 3983	AAG\|GTTAGCAATG...AATTTCTGAATT/TAATTTCTGAAT...TGCAG\|TTA	0	1	89.236
111341945	GT-AG	0.0020301357132368	153	rna-XM_021774180.2 20781816	8	26206176	26206328	Manihot esculenta 3983	GAG\|GTATGATTTC...CAAACTTTAAAT/AAGTTACTGATT...CCCAG\|CAA	2	1	92.94

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);