WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 20781815

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
111341930	GT-AG	1.000000099473604e-05	204	rna-XM_021773151.2 20781815	1	23783306	23783509	Manihot esculenta 3983	CAG\|GTTATTTGAT...TGACTTTTATTG/CTTTTTGTGACT...ACTAG\|CAT	1	1	25.788
111341931	GT-AG	0.0008273988893167	6376	rna-XM_021773151.2 20781815	2	23776550	23782925	Manihot esculenta 3983	GAG\|GTATGTCTTG...TTTTTTTGGACT/TTTGGACTGACT...TGTAG\|GGA	0	1	36.774
111341932	GT-AG	1.000000099473604e-05	89	rna-XM_021773151.2 20781815	3	23775348	23775436	Manihot esculenta 3983	GAG\|GTACAAACAG...TATTTTTTATTT/TTTTTATTTACT...GGCAG\|CTT	0	1	68.951
111341933	GT-AG	1.000000099473604e-05	131	rna-XM_021773151.2 20781815	4	23775058	23775188	Manihot esculenta 3983	TTG\|GTAAGATGCA...TGGTCCTTCAAT/CCGGAATTGATA...TGCAG\|GTT	0	1	73.547
111341934	GT-AG	0.000202808560205	92	rna-XM_021773151.2 20781815	5	23774623	23774714	Manihot esculenta 3983	CAG\|GTAGCTGACT...TCCTCCTTACAA/TTATTTTTCATC...TATAG\|GCT	1	1	83.463
111341935	GT-AG	0.0536255119946033	106	rna-XM_021773151.2 20781815	6	23774446	23774551	Manihot esculenta 3983	CCG\|GTATTTTTCC...TTTCTATTGATT/TTTCTATTGATT...TGCAG\|CAT	0	1	85.516
111341936	GT-AG	0.0011439120837955	2478	rna-XM_021773151.2 20781815	7	23771845	23774322	Manihot esculenta 3983	AAG\|GTATGTTCTT...CACTATTTAAAT/AATTTGGTGATT...TCCAG\|ACA	0	1	89.072
111341937	GT-AG	0.0006842954261676	122	rna-XM_021773151.2 20781815	8	23771373	23771494	Manihot esculenta 3983	AAT\|GTAATTTTCA...CTACCATTATTT/GGGATAGTTATT...TTCAG\|AAC	2	1	99.191

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);