introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 20745268

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
111172347 GT-AG 0 0.0018198481804648 94 rna-XM_044649765.1 20745268 1 24209204 24209297 Mangifera indica 29780 CAG|GTCGCTTCTT...TTAGTTTTGATA/TTAGTTTTGATA...AACAG|ATG 2 1 3.325
111172348 GT-AG 0 0.0009062948620734 696 rna-XM_044649765.1 20745268 2 24208372 24209067 Mangifera indica 29780 AAG|GTGTTCTTGA...TTTGTCCTAATT/TTTGTCCTAATT...TTCAG|GAT 0 1 7.437
111172349 GT-AG 0 1.000000099473604e-05 91 rna-XM_044649765.1 20745268 3 24207773 24207863 Mangifera indica 29780 TAG|GTAATTGATT...TTTATGTTGAAG/TGTGGATTAAAT...ACCAG|GTT 1 1 22.793
111172350 GT-AG 0 0.0013650248709095 84 rna-XM_044649765.1 20745268 4 24207555 24207638 Mangifera indica 29780 GCG|GTAACAGTTT...TAGATTTTAACT/TAGATTTTAACT...TTCAG|ACA 0 1 26.844
111172351 GT-AG 0 0.0126754862341354 101 rna-XM_044649765.1 20745268 5 24207011 24207111 Mangifera indica 29780 TTG|GTACCATTCC...TGTGTCTTCAAG/CAAGGTCTGATT...TGTAG|CTT 2 1 40.236
111172352 GT-AG 0 0.5899130598587211 460 rna-XM_044649765.1 20745268 6 24205402 24205861 Mangifera indica 29780 TTC|GTATGTTTTG...TATATTTTATTT/ATATATTTTATT...TTCAG|GGA 2 1 74.97
111172353 GT-AG 0 1.000000099473604e-05 371 rna-XM_044649765.1 20745268 7 24204878 24205248 Mangifera indica 29780 GAG|GTGTTGAGAC...GTCTCATTAGAT/TGATGTCTCATT...TGCAG|CCA 2 1 79.595

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);