introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 20745196

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
111171447 GT-AG 0 1.000000099473604e-05 219 rna-XM_044626732.1 20745196 1 28630319 28630537 Mangifera indica 29780 AAG|GTAGAATCAT...CTCTTCTTTGTG/AGTAAACTAAAT...AATAG|GAA 0 1 52.41
111171448 GT-AG 0 0.0001642687695423 82 rna-XM_044626732.1 20745196 2 28630150 28630231 Mangifera indica 29780 TTG|GTAAGCTAAG...CTCACTTTAACC/ACATTACTCACT...ATTAG|GTA 0 1 54.351
111171449 GT-AG 0 1.000000099473604e-05 174 rna-XM_044626732.1 20745196 3 28629331 28629504 Mangifera indica 29780 AGG|GTAAGTAAAA...GTACATTTAACT/GTACATTTAACT...TTCAG|GCT 0 1 68.742
111171450 GT-AG 0 0.0012487757224973 298 rna-XM_044626732.1 20745196 4 28628868 28629165 Mangifera indica 29780 CAG|GTAATCTTTG...TTTCTCATAATT/TAATTTTTCACC...TGCAG|CAA 0 1 72.423
111171451 GT-AG 0 1.000000099473604e-05 85 rna-XM_044626732.1 20745196 5 28628488 28628572 Mangifera indica 29780 CAG|GTGATTGGTT...CTCTTCTTGCTA/CTTGCTATAAGT...TATAG|CAA 1 1 79.005
111171452 GT-AG 0 3.2463320967372415e-05 82 rna-XM_044626732.1 20745196 6 28628191 28628272 Mangifera indica 29780 CAG|GTAATTTTCC...ATTGTCTTGTCA/TTGGTTGTGATT...AATAG|GTT 0 1 83.802
111171453 GT-AG 0 1.000000099473604e-05 87 rna-XM_044626732.1 20745196 7 28627798 28627884 Mangifera indica 29780 GAG|GTGGGTTGGC...TGTACTTTAGTA/CATGTATTCAAA...TTTAG|GCT 0 1 90.629
111171454 GT-AG 0 0.0123020921389417 95 rna-XM_044626732.1 20745196 8 28627639 28627733 Mangifera indica 29780 AAG|GTATGTTTCT...TGATTTTTATTA/ATGATTTTTATT...TTCAG|TTA 1 1 92.057
111171455 GT-AG 0 2.750538866042371e-05 213 rna-XM_044626732.1 20745196 9 28627186 28627398 Mangifera indica 29780 AAG|GTAATTTGGG...GACTTCTTATCC/AAGATACTGACT...TGTAG|GGC 1 1 97.412

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);