WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 20745194

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
111171429	GT-AG	1.000000099473604e-05	293	rna-XM_044626721.1 20745194	1	28623463	28623755	Mangifera indica 29780	AAG\|GTAAAACCAT...TTTTCCTTATGT/CTTTTCCTTATG...AACAG\|GAA	0	1	52.93
111171430	GT-AG	2.798718769533446e-05	81	rna-XM_044626721.1 20745194	2	28623295	28623375	Mangifera indica 29780	CTG\|GTAAGCACAA...ACATTCTTAACC/GCATTGCTCACA...GTTAG\|GTC	0	1	54.839
111171431	GT-AG	1.000000099473604e-05	171	rna-XM_044626721.1 20745194	3	28622479	28622649	Mangifera indica 29780	AGA\|GTAAGTGAAT...TTTTTCTTTTTT/AAATTTCTCATT...TATAG\|GCT	0	1	68.993
111171432	GT-AG	0.0004905100590917	677	rna-XM_044626721.1 20745194	4	28621637	28622313	Mangifera indica 29780	CAG\|GTAATCCTTG...AATACTTTGACA/CAATTTCTCACA...TGCAG\|CAA	0	1	72.614
111171433	GT-AG	0.0103806036689079	86	rna-XM_044626721.1 20745194	5	28621256	28621341	Mangifera indica 29780	CAG\|GTAACCAGTT...TTGTTTTTATTC/CTTGTTTTTATT...TAAAG\|CAA	1	1	79.087
111171434	GT-AG	0.0001014558032953	502	rna-XM_044626721.1 20745194	6	28620539	28621040	Mangifera indica 29780	CAG\|GTAATTTTCC...AACATTTTGACT/AACATTTTGACT...CACAG\|GTT	0	1	83.805
111171435	GT-AG	1.000000099473604e-05	85	rna-XM_044626721.1 20745194	7	28620148	28620232	Mangifera indica 29780	GAG\|GTGGGCTGGT...CTAACATTAGCA/GGGATGCTAACA...TTTAG\|GCG	0	1	90.52
111171436	GT-AG	0.0011551520594399	563	rna-XM_044626721.1 20745194	8	28619521	28620083	Mangifera indica 29780	AAG\|GTATGTCTCT...GCAATCTTATAT/TCCATTTTCAAC...TCCAG\|TTA	1	1	91.925
111171437	GT-AG	0.0005541786271929	261	rna-XM_044626721.1 20745194	9	28619020	28619280	Mangifera indica 29780	AAG\|GTAACTATGA...ATATCATTATCA/AAGATACTGACT...TGTAG\|GAC	1	1	97.191

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);