WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 20745175

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
111171038	GT-AG	1.000000099473604e-05	649	rna-XM_044635844.1 20745175	3	9459412	9460060	Mangifera indica 29780	GAG\|GTTAGGTTTT...GCATTCTTCATC/GTAATTCTAACT...TGCAG\|AGA	2	1	5.234
111171039	GT-AG	4.961710366585415	169	rna-XM_044635844.1 20745175	4	9456185	9456353	Mangifera indica 29780	CAG\|GTATCCCACT...GTGCTCTTATTT/TGTGCTCTTATT...TGCAG\|ATT	0	1	51.095
111171040	GT-AG	1.000000099473604e-05	168	rna-XM_044635844.1 20745175	5	9453472	9453639	Mangifera indica 29780	CGG\|GTAAGGTCTC...AGTTCTTTGAAA/TTTATACTTATT...TGCAG\|CGG	1	1	89.262
111171041	GT-AG	7.267286097336272e-05	215	rna-XM_044635844.1 20745175	6	9452802	9453016	Mangifera indica 29780	AAG\|GTAAATTATT...TAATCTTTATTA/CTAATCTTTATT...GTCAG\|ATT	0	1	96.086
111171042	GT-AG	1.000000099473604e-05	88	rna-XM_044635844.1 20745175	7	9452597	9452684	Mangifera indica 29780	AAG\|GTAATTGAAC...TATTTCTTACTA/TTATTTCTTACT...AACAG\|AGT	0	1	97.84
111181589	GT-AG	1.000000099473604e-05	777	rna-XM_044635844.1 20745175	1	9461089	9461865	Mangifera indica 29780	AAG\|GTGAGCTCAA...GGATCTTTAGTT/GTTTGGCTTATG...CACAG\|GAG		0	2.519
111181590	GT-AG	0.0183499057905853	784	rna-XM_044635844.1 20745175	2	9460135	9460918	Mangifera indica 29780	GCG\|GTACTCTTCT...ATTCCCTTTTTC/CCCTTTTTCATT...TGCAG\|GAA		0	5.069

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);