WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 20642361

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
110537175	GT-AG	0.0001459557128483	991	rna-XM_008347238.3 20642361	1	17481013	17482003	Malus domestica 3750	CAG\|GTATTGAAAT...GAGTCCTTGATT/TTTAAACTGACT...TGCAG\|ATC	0	1	24.072
110537176	GT-AG	0.0001103760412433	1407	rna-XM_008347238.3 20642361	2	17479385	17480791	Malus domestica 3750	GAG\|GTTTTTCTGA...AAAACCCTAACC/AAAACCCTAACC...GCAAG\|CAC	2	1	31.884
110537177	GT-AG	0.0008692401287427	767	rna-XM_008347238.3 20642361	3	17478017	17478783	Malus domestica 3750	GAG\|GTACCGATTC...TTCTATTTATTG/GTTCTATTTATT...CTCAG\|GTG	0	1	53.128
110537178	GT-AG	0.0001028988681364	97	rna-XM_008347238.3 20642361	4	17477751	17477847	Malus domestica 3750	CTG\|GTACATTAAT...TGTATTTTATAT/TTGTATTTTATA...TGTAG\|GAG	1	1	59.102
110537179	GT-AG	0.0048327700983238	700	rna-XM_008347238.3 20642361	5	17476920	17477619	Malus domestica 3750	TGG\|GTATGCTAAT...TTAAATTTGATA/TTAAATTTGATA...TTCAG\|GTG	0	1	63.733
110537180	GT-AG	1.000000099473604e-05	124	rna-XM_008347238.3 20642361	6	17476004	17476127	Malus domestica 3750	AAG\|GTTAGTATGC...GCTGTGTTAATT/GCTGTGTTAATT...TACAG\|GAC	0	1	91.729
110537181	GT-AG	2.7130687962846856e-05	132	rna-XM_008347238.3 20642361	7	17475824	17475955	Malus domestica 3750	CAG\|GTAATATTAC...TCTACCTTAACA/TCTACCTTAACA...TGCAG\|ATA	0	1	93.425
110537182	GT-AG	1.000000099473604e-05	414	rna-XM_008347238.3 20642361	8	17475296	17475709	Malus domestica 3750	TTG\|GTAAGTTCCT...TAATCCTTCTCA/ATCCTTCTCACC...TGTAG\|GCT	0	1	97.455

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);