WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 20642348

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
110537081	GT-AG	1.000000099473604e-05	805	rna-XM_029101417.1 20642348	1	24678271	24679075	Malus domestica 3750	CAG\|GTGAAGTGTT...AAACTCTTGATA/AATTTGTTTATC...TGCAG\|GAT	0	1	19.65
110537082	GT-AG	1.000000099473604e-05	91	rna-XM_029101417.1 20642348	2	24680566	24680656	Malus domestica 3750	CAG\|GTAAATATTT...CACAACTTAATT/ACTTAATTCACT...AACAG\|TGC	2	1	67.964
110537083	GT-AG	0.3337276944320177	147	rna-XM_029101417.1 20642348	3	24680799	24680945	Malus domestica 3750	AAG\|GTACCTTTTC...TTTTTCTTCTAT/CTATGTCTGACT...TTCAG\|TTT	0	1	72.568
110537084	GT-AG	2.8336851512559195e-05	171	rna-XM_029101417.1 20642348	4	24681054	24681224	Malus domestica 3750	AAG\|GTATGTACAG...TTGTCTATAAAT/ACGTATCTAATA...TTCAG\|GCT	0	1	76.07
110537085	GT-AG	1.000000099473604e-05	118	rna-XM_029101417.1 20642348	5	24681438	24681555	Malus domestica 3750	CAG\|GTTAAGAACC...GTAACTTTGATT/GTAACTTTGATT...AACAG\|AGA	0	1	82.977
110537086	GT-AG	0.0001100543447308	1284	rna-XM_029101417.1 20642348	6	24681667	24682950	Malus domestica 3750	CAG\|GTTTGTTTCA...TATTCTTTGTTT/ATTGTATTTATT...TACAG\|CAT	0	1	86.576
110537087	GT-AG	0.0006440684768847	912	rna-XM_029101417.1 20642348	7	24683146	24684057	Malus domestica 3750	CAG\|GTTTGCTACT...TCCTTCTTATTC/TTCCTTCTTATT...TTTAG\|GCG	0	1	92.899
110537088	GT-AG	0.0065744481386337	264	rna-XM_029101417.1 20642348	8	24684233	24684496	Malus domestica 3750	GGG\|GTACTTTTTC...GTTGCCTCAAAT/AAGGTGCTGAAT...TGCAG\|AGA	1	1	98.573

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);