WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 20211475

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
108234864	GT-AG	1.000000099473604e-05	136	rna-XM_019586704.1 20211475	1	2695034	2695169	Lupinus angustifolius 3871	GTG\|GTGAGGATAA...TGTATTTTCTCT/TTGAGGTTAATT...TGTAG\|AAT	0	1	69.819
108234865	GT-AG	0.0006532773244062	136	rna-XM_019586704.1 20211475	2	2694793	2694928	Lupinus angustifolius 3871	CAG\|GTTTTCATAC...GTTTCCTTTTCC/TTCGGTTTGATG...TTCAG\|ACA	0	1	73.161
108234866	GT-AG	1.000000099473604e-05	445	rna-XM_019586704.1 20211475	3	2694195	2694639	Lupinus angustifolius 3871	ATG\|GTAATATTTT...GTGATTTCATTT/AGTGATTTCATT...TCCAG\|ATT	0	1	78.032
108234867	GT-AG	1.000000099473604e-05	91	rna-XM_019586704.1 20211475	4	2693940	2694030	Lupinus angustifolius 3871	TAG\|GTAATATTTG...GTTTGTTTACTC/TGTTTGTTTACT...AACAG\|AAC	2	1	83.254
108234868	GT-AG	0.0269601610870449	222	rna-XM_019586704.1 20211475	5	2693570	2693791	Lupinus angustifolius 3871	AAG\|GTACCCATAA...ATAACCTGATAG/TATAACCTGATA...TTCAG\|ATT	0	1	87.966
108234869	GT-AG	0.0303875096308283	93	rna-XM_019586704.1 20211475	6	2693354	2693446	Lupinus angustifolius 3871	AAG\|GTATTCTCGG...CTTTCCTTGCAT/TATTTTCTAACG...TGTAG\|ATT	0	1	91.882
108234870	GT-AG	1.000000099473604e-05	112	rna-XM_019586704.1 20211475	7	2693154	2693265	Lupinus angustifolius 3871	TAG\|GTGAGAACCA...TCCATTTTAGCT/TCTATAATAATA...TGCAG\|GAG	1	1	94.683

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);