WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 19905825

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
106496069	GT-AG	0.0001121871056534	219579	rna-XM_021532327.2 19905825	1	16489691	16709269	Lonchura striata 40157	TGC\|GTAAGTACCA...TATTTTTTATCC/CTATTTTTTATC...TACAG\|CCG	1	1	8.38
106496070	GT-AG	1.000000099473604e-05	2176	rna-XM_021532327.2 19905825	2	16487362	16489537	Lonchura striata 40157	GAG\|GTAGGTGCTC...AACACTTTGAAA/TTCTTTCTCATC...ACCAG\|AAC	1	1	11.586
106496071	GT-AG	0.0002780674165241	8787	rna-XM_021532327.2 19905825	3	16478444	16487230	Lonchura striata 40157	CCA\|GTAAGTCTTT...ATGTTTTTAATT/TTTTTTTTCACA...TATAG\|TTT	0	1	14.331
106496072	GT-AG	1.000000099473604e-05	2180	rna-XM_021532327.2 19905825	4	16476201	16478380	Lonchura striata 40157	AAG\|GTACTGGAAA...CTGATTTTGAAT/AATGTATTCATT...TGCAG\|TCC	0	1	15.651
106496073	GT-AG	1.000000099473604e-05	3210	rna-XM_021532327.2 19905825	5	16472798	16476007	Lonchura striata 40157	CTG\|GTACAAATTT...ATTTGTTTACTA/AATTTGTTTACT...TGCAG\|GAG	1	1	19.694
106496074	GT-AG	1.000000099473604e-05	1234	rna-XM_021532327.2 19905825	6	16471432	16472665	Lonchura striata 40157	TAG\|GTGTAGTATA...CCAGCTTTCCAT/GTCCCACTCACC...CCTAG\|ATT	1	1	22.46
106496075	GT-AG	1.000000099473604e-05	487	rna-XM_021532327.2 19905825	7	16467996	16468482	Lonchura striata 40157	AAG\|GTCAGTTGGG...TGACTCATAACA/TGGAGTCTGACT...TTAAG\|AGT	1	1	84.245
106496076	GT-AG	0.0002527016566824	711	rna-XM_021532327.2 19905825	8	16467158	16467868	Lonchura striata 40157	CAG\|GTGACCTCAC...TTTTCCTTTGTG/CTAAGCATTATA...TACAG\|ATC	2	1	86.906

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);