introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 19819715

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
106118040 GT-AG 0 1.000000099473604e-05 157 rna-XM_022021747.1 19819715 1 980397 980553 Lobosporangium transversale 64571 GAG|GTAAGTGTAC...GAACTGTTAAAC/TATAAACTAATG...ACCAG|ATG 1 1 0.769
106118041 GT-AG 0 8.857317393192552e-05 130 rna-XM_022021747.1 19819715 2 980571 980700 Lobosporangium transversale 64571 ACC|GTAAGTCTTG...ATTTCCTTTTTG/AATGCTTTCATT...CGTAG|GTC 0 1 1.456
106118042 GT-AG 0 1.000000099473604e-05 436 rna-XM_022021747.1 19819715 3 980791 981226 Lobosporangium transversale 64571 AAG|GTAAGAAAAG...TCATCCTTATTT/TATTTATTAACC...TCTAG|GTT 0 1 5.097
106118043 GC-AG 0 1.000000099473604e-05 106 rna-XM_022021747.1 19819715 4 981582 981687 Lobosporangium transversale 64571 ATG|GCAAGTTGCT...TTTTTTTTTTCT/CAATGGCTAATA...TGCAG|ATA 1 1 19.458
106118044 GT-AG 0 1.000000099473604e-05 173 rna-XM_022021747.1 19819715 5 982103 982275 Lobosporangium transversale 64571 CAT|GTAAGTAACT...TTTACCTGGAAC/CCCATTTTCACC...ACTAG|GTA 2 1 36.246
106118045 GT-AG 0 0.0015984056507957 145 rna-XM_022021747.1 19819715 6 982605 982749 Lobosporangium transversale 64571 AAG|GTAACTTCCT...TTTTTTTTTGCG/CGATGGTTTATA...TATAG|ATG 1 1 49.555
106118046 GT-AG 0 0.5251374137521847 115 rna-XM_022021747.1 19819715 7 983027 983141 Lobosporangium transversale 64571 TCC|GTATGTTGAA...ACTCTCTTGATA/ACTCTCTTGATA...AAAAG|TAT 2 1 60.761

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);