introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 19819650

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
106117793 GT-AG 0 5.002964891769741e-05 104 rna-XM_022029565.1 19819650 1 1016550 1016653 Lobosporangium transversale 64571 TGG|GTAAACAAAT...ACTATTTTAACC/ACTATTTTAACC...ATCAG|GGA 0 1 1.203
106117794 GT-AG 0 0.0164018793997791 80 rna-XM_022029565.1 19819650 2 1016704 1016783 Lobosporangium transversale 64571 CAG|GTATACATAT...GGTCCCTTACAA/TGGTCCCTTACA...TCTAG|CCT 2 1 2.205
106117795 GT-AG 0 2.318152156933596e-05 102 rna-XM_022029565.1 19819650 3 1017022 1017123 Lobosporangium transversale 64571 TGG|GTAAGTCCTA...GTTGCTTTAATA/AGTTTACTCATA...ACTAG|TTG 0 1 6.975
106117796 GT-AG 0 0.0002893582115617 105 rna-XM_022029565.1 19819650 4 1018172 1018276 Lobosporangium transversale 64571 TGC|GTAAGTCCTC...TTAACCTTAATG/TCTCTTTTAACC...AATAG|TAT 1 1 27.982
106117797 GT-AG 0 1.000000099473604e-05 106 rna-XM_022029565.1 19819650 5 1018707 1018812 Lobosporangium transversale 64571 AGG|GTAAGATAAT...TTTTTTTTAAAA/TTTTTTTTTAAA...AATAG|AAC 2 1 36.601
106117798 GT-AG 0 1.000000099473604e-05 137 rna-XM_022029565.1 19819650 6 1020370 1020506 Lobosporangium transversale 64571 GAA|GTAAGATATT...TTCATTTGAACC/TAATAGTTCATT...ATTAG|CTT 2 1 67.809

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);