introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 19749005

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
105762153 GT-AG 0 1.125623019375228e-05 1086 rna-XM_007445606.1 19749005 1 1009213 1010298 Lipotes vexillifer 118797 CAG|GTAGGTCTCA...TTATCTTTATAT/ATTGTTCTGACA...CATAG|CTG 0 1 11.801
105762154 GT-AG 0 1.000000099473604e-05 11051 rna-XM_007445606.1 19749005 2 998111 1009161 Lipotes vexillifer 118797 GCG|GTAAGTAAAC...GTTTCCTGGAGT/GAGTAGCTTACA...TACAG|CCT 0 1 22.36
105762155 GT-AG 0 0.0042650057315856 22192 rna-XM_007445606.1 19749005 3 975847 998038 Lipotes vexillifer 118797 GAG|GTATGTTGTT...AAATCTATAACT/AAATCTATAACT...CTCAG|CTT 0 1 37.267
105762156 GT-AG 0 1.000000099473604e-05 20613 rna-XM_007445606.1 19749005 4 955204 975816 Lipotes vexillifer 118797 CAG|GTAAGATTGT...GTCATTTTGATT/GTCATTTTGATT...TTCAG|ATT 0 1 43.478
105762157 GT-AG 0 0.000788102497725 311 rna-XM_007445606.1 19749005 5 954866 955176 Lipotes vexillifer 118797 ATG|GTAAGCTTTA...TTTTCCTTTCTT/TAGAGGCTAATA...TGCAG|CCT 0 1 49.068
105762158 GT-AG 0 1.000000099473604e-05 21057 rna-XM_007445606.1 19749005 6 933776 954832 Lipotes vexillifer 118797 GAG|GTGAGGCATC...ATTGTTGTGACT/ATTGTTGTGACT...CCCAG|GAT 0 1 55.901
105762159 GT-AG 0 1.000000099473604e-05 3186 rna-XM_007445606.1 19749005 7 930528 933713 Lipotes vexillifer 118797 GTG|GTGAGCCCGT...GAGTTTTTCTCT/CACAAATTTACA...TACAG|CAT 2 1 68.737
105762160 GT-AG 0 1.000000099473604e-05 35912 rna-XM_007445606.1 19749005 8 894570 930481 Lipotes vexillifer 118797 ATG|GTAAGTAGAT...GCTTCCTTCTCT/TTGCCTGTCACA...TGCAG|GGC 0 1 78.261

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);