WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 19668009

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
105497738	GT-AG	1.000000099473604e-05	607	rna-KI688_000566 19668009	1	2075640	2076246	Linnemannia hyalina 64524	GAG\|GTGAGGTGAC...CATGCCCTACCT/CTACCTGTGATA...AACAG\|TGC	0	1	2.174
105497739	GT-AG	1.000000099473604e-05	137	rna-KI688_000566 19668009	2	2074773	2074909	Linnemannia hyalina 64524	AAG\|GTTTGTGCAC...TGCTCCTTGTGC/CTTGTGCTGACC...AATAG\|TGA	1	1	18.204
105497740	GT-AG	1.000000099473604e-05	173	rna-KI688_000566 19668009	3	2074380	2074552	Linnemannia hyalina 64524	GAG\|GTAAGGGTTC...ACCTGCTTAATT/TTGTTTTTTACG...CCTAG\|TCC	2	1	23.035
105497741	GT-AG	0.006770879765483	103	rna-KI688_000566 19668009	4	2074157	2074259	Linnemannia hyalina 64524	CAA\|GTATGTCCAG...ATTATCTTACCT/CATTATCTTACC...ACTAG\|ATA	2	1	25.67
105497742	GT-AG	0.0012256220605459	87	rna-KI688_000566 19668009	5	2073825	2073911	Linnemannia hyalina 64524	TGA\|GTATGTGCTT...TTTTCTTTCCCC/ATGAGTCTAATC...TATAG\|TTG	1	1	31.05
105497743	GT-AG	0.0003252579728305	126	rna-KI688_000566 19668009	6	2073600	2073725	Linnemannia hyalina 64524	AGG\|GTCTTTTAAT...AGTTTCTTACTT/GAGTTTCTTACT...GATAG\|GCT	1	1	33.224
105497744	GT-AG	4.080497481835821e-05	102	rna-KI688_000566 19668009	7	2073368	2073469	Linnemannia hyalina 64524	CAA\|GTAAGTCATG...TGTTTCTTATTT/TTATTTCTCATT...ATTAG\|CCA	2	1	36.078
105497745	GT-AG	1.1533808905967572e-05	105	rna-KI688_000566 19668009	8	2070374	2070478	Linnemannia hyalina 64524	CTG\|GTAAGCTCAC...CATTCTTTTTCT/TTGGAACTCATT...AATAG\|GAT	2	1	99.517

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);