WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 19667994

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
105497663	GT-AG	1.000000099473604e-05	571	rna-KI688_000611 19667994	1	2210064	2210634	Linnemannia hyalina 64524	GAG\|GTAAAAATAA...TCTACCTTTACT/CAATTACTCATC...GTTAG\|CAA	0	1	12.987
105497664	GT-AG	9.251444794855256e-05	292	rna-KI688_000611 19667994	2	2210741	2211032	Linnemannia hyalina 64524	ACA\|GTCGCACTCA...CTCCTCTTCTAG/CTTTTTACAATT...CTTAG\|CCA	1	1	14.982
105497665	GT-AG	2.6548711094610228e-05	95	rna-KI688_000611 19667994	3	2211285	2211379	Linnemannia hyalina 64524	AAG\|GTACAATCCA...CTTTTTATGACT/CTTTTTATGACT...CATAG\|AAA	1	1	19.725
105497666	GT-AG	1.5931370573987366e-05	100	rna-KI688_000611 19667994	4	2211484	2211583	Linnemannia hyalina 64524	ATG\|GTACGTGGTG...TTATCATTGACT/CAGTTTATCATT...TATAG\|GAT	0	1	21.683
105497667	GT-AG	0.0001479786551017	98	rna-KI688_000611 19667994	5	2211599	2211696	Linnemannia hyalina 64524	AAG\|GTATGGATGC...TGTCTTTTAACT/TGTCTTTTAACT...GATAG\|ATT	0	1	21.965
105497668	GT-AG	0.0047683596848091	86	rna-KI688_000611 19667994	6	2212591	2212676	Linnemannia hyalina 64524	AGT\|GTAAGTTCCA...TTTTCCTTGATA/TGATAACTCACC...AATAG\|CTG	0	1	38.792
105497669	GT-AG	0.9428012828393376	105	rna-KI688_000611 19667994	7	2212875	2212979	Linnemannia hyalina 64524	ACG\|GTAACCTTCA...TCTTTTTTGAAT/TTTGATCTAACT...AATAG\|ACG	0	1	42.518
105497670	GT-AG	1.000000099473604e-05	99	rna-KI688_000611 19667994	8	2213098	2213196	Linnemannia hyalina 64524	CTG\|GTAAGTAAAC...ATGCTTGTAATA/TGAGAGCTAACT...CTTAG\|CGT	1	1	44.739

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);