WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 19626556

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
105249077	GT-AG	1.000000099473604e-05	60888	rna-XM_013537037.2 19626556	1	1689152	1750039	Lingula anatina 7574	AAG\|GTAGGTATTG...AAACTCCTAACA/AAACTCCTAACA...TTCAG\|ACA	1	1	17.68
105249078	GT-AG	1.000000099473604e-05	7783	rna-XM_013537037.2 19626556	2	1750165	1757947	Lingula anatina 7574	CAG\|GTAAGACTAC...TTCCCCTTCATT/TTCCCCTTCATT...TTTAG\|GTG	0	1	31.757
105249079	GT-AG	0.0079135971835535	2085	rna-XM_013537037.2 19626556	3	1757996	1760080	Lingula anatina 7574	AAG\|GTAACTTGCA...GTCCTCTTGATT/TTAGTTCTAATT...TCCAG\|GAA	0	1	37.162
105249080	GT-AG	1.000000099473604e-05	4924	rna-XM_013537037.2 19626556	4	1760178	1765101	Lingula anatina 7574	GTG\|GTAAGGCTCA...TGTTCATTGACT/ATGCTTTTTATA...TTCAG\|AAT	1	1	48.086
105249081	GT-AG	0.0011637730914603	404	rna-XM_013537037.2 19626556	5	1765173	1765576	Lingula anatina 7574	GAA\|GTAAATTTGC...CAATTTTTGACA/CAATTTTTGACA...TCCAG\|GAG	0	1	56.081
105249082	GT-AG	0.0004405089806083	891	rna-XM_013537037.2 19626556	6	1765790	1766680	Lingula anatina 7574	CAG\|GTAATTTTGA...GTTTTTTTAATT/GTTTTTTTAATT...ACCAG\|AAA	0	1	80.068
105249083	GT-AG	1.6963909901287793e-05	3598	rna-XM_013537037.2 19626556	7	1766744	1770341	Lingula anatina 7574	GGG\|GTAAGCATTA...TTGTTTTTTTCC/AGCATGCTGATT...TATAG\|GAC	0	1	87.162
105249084	GT-AG	0.0032232123724061	4387	rna-XM_013537037.2 19626556	8	1770431	1774817	Lingula anatina 7574	TAA\|GTACATCTAA...ATCTTCTTATCT/TATCTTCTTATC...TTTAG\|GAT	2	1	97.185

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);