WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 19586967

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
104999411	GT-AG	1.000000099473604e-05	7945	rna-XM_022390630.1 19586967	2	3484879	3492823	Limulus polyphemus 6850	AAG\|GTGAGATCCA...ACTTTTTTGTTC/AAAATGTTGATA...TTTAG\|GTG	1	1	17.422
104999412	GT-AG	1.000000099473604e-05	5019	rna-XM_022390630.1 19586967	3	3479675	3484693	Limulus polyphemus 6850	CTG\|GTAAGTACTG...CTACATTTAATA/AGTAATCTCACC...TACAG\|TTC	0	1	33.867
104999413	GT-AG	1.000000099473604e-05	9713	rna-XM_022390630.1 19586967	4	3469851	3479563	Limulus polyphemus 6850	AGG\|GTAAGTATGT...TATTCCTTCATT/TATTCCTTCATT...TGTAG\|CAG	0	1	43.733
104999414	GT-AG	0.0001302424803771	1146	rna-XM_022390630.1 19586967	5	3468581	3469726	Limulus polyphemus 6850	TAA\|GTACGTAGTT...GCTTTTTTACAT/ACTTGTCTAATT...TATAG\|CAC	1	1	54.756
104999415	GT-AG	1.000000099473604e-05	4344	rna-XM_022390630.1 19586967	6	3464004	3468347	Limulus polyphemus 6850	ACA\|GTAAAGTATT...TAATAGTTAATA/TAATAGTTAATA...TGCAG\|TCT	0	1	75.467
104999416	GT-AG	0.0014496020511811	3822	rna-XM_022390630.1 19586967	7	3459995	3463816	Limulus polyphemus 6850	GAG\|GTATGATTTA...TTATTTTTATAA/GTTATTTTTATA...TTTAG\|ATA	1	1	92.089
104999503	GT-AG	0.0012891894734998	2420	rna-XM_022390630.1 19586967	1	3493012	3495431	Limulus polyphemus 6850	GTG\|GTATGGTTTA...GTATTCTAAATA/TGTATTCTAAAT...ACTAG\|GTC		0	1.6

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);