introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 19533910

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
104744962 GT-AG 0 0.0086349982842838 971 rna-XM_009951353.1 19533910 1 2711 3681 Leptosomus discolor 188344 AAG|GTATTTTATT...CTTCTTTTATTT/TCTTCTTTTATT...CCTAG|GTG 1 1 15.076
104744963 GT-AG 0 1.000000099473604e-05 87 rna-XM_009951353.1 19533910 2 3907 3993 Leptosomus discolor 188344 CAG|GTAAAAAATA...ACTGCTTTATGT/TACTGCTTTATG...TTTAG|GAG 1 1 32.121
104744964 GT-AG 0 0.0001270227990104 2857 rna-XM_009951353.1 19533910 3 4090 6946 Leptosomus discolor 188344 CAG|GTATGTAGAG...TGGCTCTTAGTC/TTTTTCTTTATT...TTTAG|CTG 1 1 39.394
104744965 GT-AG 0 0.000231623260209 1641 rna-XM_009951353.1 19533910 4 7075 8715 Leptosomus discolor 188344 GAG|GTATTTGGCA...CTTTTCTTTTCC/TGTGACCTGACT...CACAG|CGA 0 1 49.091
104744966 GT-AG 0 1.000000099473604e-05 1564 rna-XM_009951353.1 19533910 5 8839 10402 Leptosomus discolor 188344 AAT|GTAAGGAATT...TTCTTCTTGTTG/GTGAAAGTCATT...TAAAG|GTT 0 1 58.409
104744967 GT-AG 0 1.000000099473604e-05 967 rna-XM_009951353.1 19533910 6 10532 11498 Leptosomus discolor 188344 CCC|GTGAGTAACA...CTCTTCTAAATG/AATTGGCTGACC...TTCAG|GTC 0 1 68.182
104744968 GT-AG 0 1.000000099473604e-05 810 rna-XM_009951353.1 19533910 7 11613 12422 Leptosomus discolor 188344 GAG|GTTTGTGTGT...TAGATCTGACTT/GTAGATCTGACT...TTTAG|GTA 0 1 76.818
104744969 GT-AG 0 1.000000099473604e-05 955 rna-XM_009951353.1 19533910 8 12568 13522 Leptosomus discolor 188344 AAG|GTAAGGAAAC...TTTTCTTTCTCC/TCTCCTTTTATT...TGTAG|ACT 1 1 87.803

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);