introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 19533885

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
104744682 GT-AG 0 1.000000099473604e-05 834 rna-XM_009947907.1 19533885 1 17812 18645 Leptosomus discolor 188344 AAG|GTAACGGGGT...AGAGTTTTACTG/CAGAGTTTTACT...CTAAG|GTT 0 1 16.268
104744683 GT-AG 0 0.0001723104461992 841 rna-XM_009947907.1 19533885 2 16822 17662 Leptosomus discolor 188344 TGC|GTAAGTGTTG...TATTCATTAACA/GTTATATTCATT...TCTAG|TTA 2 1 40.032
104744684 GT-AG 0 1.000000099473604e-05 5560 rna-XM_009947907.1 19533885 3 11202 16761 Leptosomus discolor 188344 CTT|GTGAGTGCCT...GTTTTTTTTCCT/CAATTTATGATG...TTTAG|TTA 2 1 49.601
104744685 GT-AG 0 1.000000099473604e-05 4125 rna-XM_009947907.1 19533885 4 6975 11099 Leptosomus discolor 188344 GAG|GTAAGATTTC...CTTCCCTTTTCT/AAGTGTCTGACC...CCCAG|GGC 2 1 65.869
104744686 GT-AG 0 1.000000099473604e-05 397 rna-XM_009947907.1 19533885 5 6551 6947 Leptosomus discolor 188344 TAG|GTAAGACACC...TCCTCCTTATTC/CTTATTCTGAAT...AGTAG|CAG 2 1 70.175
104744687 GT-AG 0 0.0006427401787967 1261 rna-XM_009947907.1 19533885 6 5248 6508 Leptosomus discolor 188344 GAG|GTAACGTAGC...CTGGTCTTGATT/CTGGTCTTGATT...CCAAG|GAA 2 1 76.874
104744688 GT-AG 0 1.6024161134453614e-05 217 rna-XM_009947907.1 19533885 7 4982 5198 Leptosomus discolor 188344 AAG|GTAACAGTCT...GTTATCCTGACT/GTTATCCTGACT...TGCAG|TCC 0 1 84.689

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);