WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 19533859

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
104744472	GT-AG	0	0.00185120772727	504	rna-XM_009961143.1 19533859	1	3331	3834	Leptosomus discolor 188344	AAG\|GTAACTTCAG...TCTGCTTTTATG/TCTGCTTTTATG...CACAG\|AGA	0	1	16.863
104744473	GT-AG	0	1.000000099473604e-05	840	rna-XM_009961143.1 19533859	2	3939	4778	Leptosomus discolor 188344	GTG\|GTGAGTATCT...TTTTTTTTTTTT/ATTGGTTTGATA...TCTAG\|CAA	2	1	30.458
104744474	GT-AG	1	99.99975863088976	1019	rna-XM_009961143.1 19533859	3	4868	5886	Leptosomus discolor 188344	GCA\|GTATCCTTTT...GTTTCCTTAGCT/TGTTTCCTTAGC...TTAAG\|AAA	1	1	42.092
104744475	GT-AG	0	0.000255643072302	930	rna-XM_009961143.1 19533859	4	5958	6887	Leptosomus discolor 188344	GAT\|GTAAGCAAGC...TTTCCTTTAATT/TTTCCTTTAATT...GTTAG\|GAT	0	1	51.373
104744476	GT-AG	0	1.000000099473604e-05	672	rna-XM_009961143.1 19533859	5	7018	7689	Leptosomus discolor 188344	ACT\|GTGAGTAATG...GTCTCTCTGATT/GTCTCTCTGATT...TTAAG\|GTA	1	1	68.366
104744477	GT-AG	0	1.000000099473604e-05	891	rna-XM_009961143.1 19533859	7	7771	8661	Leptosomus discolor 188344	AAG\|GTAAATACTA...ACTTCTTTCAAA/ACACCTCTCACT...AACAG\|AAT	0	1	78.824
104744478	GT-AG	0	1.000000099473604e-05	509	rna-XM_009961143.1 19533859	8	8767	9275	Leptosomus discolor 188344	AAG\|GTACGTGGTT...TTGCCCTTTATA/CCCTTTATAATA...TTAAG\|CCT	0	1	92.549

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);