WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 19419608

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
103972286	GT-AG	1.000000099473604e-05	8064	rna-XM_017819778.1 19419608	1	6924823	6932886	Lepidothrix coronata 321398	CTG\|GTAAGACATC...TAGTTTTTGGTT/TATTTATGCATC...CCCAG\|GAG	1	1	37.686
103972287	GT-AG	0.0003357346592301	24077	rna-XM_017819778.1 19419608	2	6933056	6957132	Lepidothrix coronata 321398	AAA\|GTAAACATTC...ACTCCATTATTC/CCATTATTCAAG...TATAG\|TGA	2	1	46.339
103972288	GT-AG	1.000000099473604e-05	19873	rna-XM_017819778.1 19419608	3	6957261	6977133	Lepidothrix coronata 321398	TGG\|GTGAGTAATG...GTTTCCTTTTTT/CCACCACTGAAT...CACAG\|GCA	1	1	52.893
103972289	GT-AG	0.0398193883859049	31984	rna-XM_017819778.1 19419608	4	6977310	7009293	Lepidothrix coronata 321398	CAA\|GTATGCATTA...CTTCCTTTTGTT/GGCAATCTGACA...TTCAG\|ACT	0	1	61.905
103972290	GT-AG	1.000000099473604e-05	90537	rna-XM_017819778.1 19419608	5	7009544	7100080	Lepidothrix coronata 321398	CAG\|GTAAGATTCT...GTTTGTTTATTT/AAGTTTTTCACT...TTTAG\|GCT	1	1	74.706
103972291	GC-AG	1.000000099473604e-05	3452	rna-XM_017819778.1 19419608	6	7100227	7103678	Lepidothrix coronata 321398	CAG\|GCAAGTGGAT...AATACCTTGTTC/GGTTTATTCACA...TGCAG\|GCT	0	1	82.181
103972292	GT-AG	0.0001059020812792	5580	rna-XM_017819778.1 19419608	7	7103814	7109393	Lepidothrix coronata 321398	AAG\|GTAAACCAGC...CTTTCCTTAATT/CTTTCCTTAATT...TACAG\|GTG	0	1	89.094
103972293	GT-AG	1.000000099473604e-05	3931	rna-XM_017819778.1 19419608	8	7109514	7113444	Lepidothrix coronata 321398	CAG\|GTAAAAATAG...TGTTTCTTGTTC/TTCAGTCTGACT...TTCAG\|GTA	0	1	95.238

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);