WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 191

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
785	GT-AG	1.000000099473604e-05	343	rna-XM_027490919.1 191	1	476527	476869	Abrus precatorius 3816	AAG\|GTTAGTAGTA...TGACCCTTGATT/TTGAGCTTGATT...TTCAG\|GTA	0	1	2.413
786	GT-AG	1.000000099473604e-05	533	rna-XM_027490919.1 191	2	477410	477942	Abrus precatorius 3816	GAG\|GTAAGTGAAT...TTGATTTTGAAA/CTATAACTGACT...AACAG\|GTT	0	1	13.552
787	GT-AG	0.0012255723835204	110	rna-XM_027490919.1 191	3	479020	479129	Abrus precatorius 3816	AAT\|GTATGTAGCC...TTTCCTCTATCG/CTATCGCTAATT...ACAAG\|GTT	0	1	35.767
788	GT-AG	0.0001500709668999	618	rna-XM_027490919.1 191	4	479458	480075	Abrus precatorius 3816	AAG\|GTATGCCAAT...AGCTGTTTATCC/CAGCTGTTTATC...TGTAG\|CAT	1	1	42.533
789	GT-AG	2.047599458477984e-05	100	rna-XM_027490919.1 191	5	480332	480431	Abrus precatorius 3816	TAG\|GTAGATGTTT...TTTTTTTTATAT/TTTTTTTTTATA...TCTAG\|GCA	2	1	47.814
790	GT-AG	0.0013967688724219	563	rna-XM_027490919.1 191	6	480649	481211	Abrus precatorius 3816	AAG\|GTATATATAC...ATATGCTTAACA/ATATGCTTAACA...TGCAG\|GTT	0	1	52.29
791	GT-AG	1.000000099473604e-05	80	rna-XM_027490919.1 191	7	481568	481647	Abrus precatorius 3816	TGG\|GTGAGTCCAT...TGAGTCTTATTT/ATGAGTCTTATT...AACAG\|GTA	2	1	59.633
792	GT-AG	0.00790900652211	552	rna-XM_027490919.1 191	8	482146	482697	Abrus precatorius 3816	AAG\|GTATGCAACT...TCATTCTTAATA/ATCATTCTTAAT...TACAG\|GTC	2	1	69.905
793	GT-AG	1.000000099473604e-05	103	rna-XM_027490919.1 191	9	483872	483974	Abrus precatorius 3816	CAG\|GTTGTTGTCA...TTATTCTCAAAA/ATCGTTCTCATT...TTTAG\|GAT	0	1	94.121

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);