introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 19079925

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
101756794 GT-AG 0 1.000000099473604e-05 802 rna-XM_042869190.1 19079925 1 32683509 32684310 Lagopus leucura 30410 CAG|GTAGGGCTCC...CTCTTCTTTTTT/ATTTGTGTAATC...AAAAG|CAG 0 1 15.152
101756795 GT-AG 0 1.000000099473604e-05 1307 rna-XM_042869190.1 19079925 2 32685235 32686541 Lagopus leucura 30410 CAG|GTAAAGTGTG...AGGCTTTTATTT/AAGGCTTTTATT...TTAAG|ACT 0 1 44.318
101756796 GT-AG 0 0.0035800696696475 684 rna-XM_042869190.1 19079925 3 32686794 32687477 Lagopus leucura 30410 GAG|GTATGGTTCT...TTTGCTTTAATA/AATAAACTCATT...GATAG|CTA 0 1 52.273
101756797 GT-AG 0 1.000000099473604e-05 341 rna-XM_042869190.1 19079925 4 32687571 32687911 Lagopus leucura 30410 AAG|GTGAGATTAT...CATTTCTTCTCT/TGCTATTTGAAA...TCCAG|GTT 0 1 55.208
101756798 GT-AG 0 1.000000099473604e-05 1552 rna-XM_042869190.1 19079925 5 32688065 32689616 Lagopus leucura 30410 AAG|GTAACAAAAT...TTTCCTGTAACT/CTGTCACTTATT...TACAG|GTT 0 1 60.038
101756799 GT-AG 0 1.000000099473604e-05 961 rna-XM_042869190.1 19079925 6 32689758 32690718 Lagopus leucura 30410 GAG|GTATGGAATG...TATCTCTTGTAT/CAGTTAATTATC...GACAG|AGC 0 1 64.489
101756800 GT-AG 0 0.024509711210507 1811 rna-XM_042869190.1 19079925 7 32690858 32692668 Lagopus leucura 30410 ATG|GTAACCTCTT...TGTTTCTTCCAA/TTTCTTCCAACT...TTCAG|GTC 1 1 68.876

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);