introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 1893668

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
10471687 GT-AG 0 0.0001434422750331 60 AMAM017440-RA 1893668 1 5235 5294 Anopheles maculatus 74869 AGT|GTAACAAATT...GTCAATTTAAAA/TAAAAATTAAAT...TCCAG|CAC 1 1 0.369
10471688 GT-AG 0 1.000000099473604e-05 60 AMAM017440-RA 1893668 2 5465 5524 Anopheles maculatus 74869 AGG|GTGAGCAGTT...CATTTTATGATT/CATTTTATGATT...TATAG|GTG 0 1 3.223
10471689 GT-AG 0 1.000000099473604e-05 67 AMAM017440-RA 1893668 3 6269 6335 Anopheles maculatus 74869 GTG|GTAAGTAGTG...GATCTCTTGCAC/TTTGTAGTAATC...TCCAG|CAT 0 1 15.71
10471690 GT-AG 0 0.0004688918932833 69 AMAM017440-RA 1893668 4 8989 9057 Anopheles maculatus 74869 TTG|GTAAGTTTTT...GCAACCTTAATG/CTTAATGTGACT...TCCAG|AGC 1 1 60.238
10471691 GT-AG 0 1.9540597072941537e-05 150 AMAM017440-RA 1893668 5 9396 9545 Anopheles maculatus 74869 GAA|GTGTGGCTCT...TTTTTTTTAAAA/TTTTTTTTAAAA...CTCAG|GAT 0 1 65.911
10471692 GT-AG 0 1.000000099473604e-05 241 AMAM017440-RA 1893668 6 9716 9956 Anopheles maculatus 74869 AAG|GTAAGCGCAT...TTTCTCTTTTTT/TTTGAATTGAAA...TTCAG|CTC 2 1 68.765
10471693 GT-AG 0 6.635151872852838e-05 53 AMAM017440-RA 1893668 7 10076 10128 Anopheles maculatus 74869 ATA|GTAAGCATCA...AACCGTTTAATA/ACGCTTTTTATG...CGTAG|GAG 1 1 70.762

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);