introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 1893637

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
10471575 GT-AG 0 0.0004277627540669 402 AMAM018488-RA 1893637 1 5253 5654 Anopheles maculatus 74869 CCA|GTAGATATCC...TATTTCTAACCA/GTATTTCTAACC...TACAG|AGA 1 1 0.618
10471576 GT-AG 0 7.080228432717494e-05 82 AMAM018488-RA 1893637 2 2055 2136 Anopheles maculatus 74869 AAA|GTAGGTTCGA...CACTTTTTATCA/CCACTTTTTATC...TATAG|GTC 0 1 77.613
10471577 GT-AG 0 0.0009389028594001 124 AMAM018488-RA 1893637 3 1741 1864 Anopheles maculatus 74869 TTC|GTAAGCATAC...GCATCTTTACCC/AAGGTTCTAATG...TGCAG|TTT 1 1 82.308
10471578 GT-AG 0 0.0002555001740334 332 AMAM018488-RA 1893637 4 1222 1553 Anopheles maculatus 74869 GGG|GTACGTTGCC...ATCTCTTTTGCC/ATTTTTCAAAAG...CGCAG|CTT 2 1 86.929
10471579 GT-AG 0 6.967411782533586e-05 448 AMAM018488-RA 1893637 5 589 1036 Anopheles maculatus 74869 TAG|GTACGCCATC...TCGTCTCTATTC/GGTTGTCTAACG...CCCAG|TGC 1 1 91.5
10471580 GT-AG 0 1.000000099473604e-05 186 AMAM018488-RA 1893637 6 287 472 Anopheles maculatus 74869 CAG|GTAATTAAAC...TTCCCTGTACCA/CCTGTACCAATC...TGCAG|GTG 0 1 94.366

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);