WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 18874305

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
100497036	GT-AG	1.000000099473604e-05	735	rna-XM_017426363.3 18874305	2	32325081	32325815	Kryptolebias marmoratus 37003	GGG\|GTGAGTTGCT...TGTTGTTTAGTC/ATGTTGTTTAGT...TTCAG\|ATT	2	1	5.344
100497037	GT-AG	6.229642945433893e-05	1179	rna-XM_017426363.3 18874305	3	32325946	32327124	Kryptolebias marmoratus 37003	CAG\|GTACGCCGAC...AGGATTTTGATT/AGGATTTTGATT...TTCAG\|ATG	0	1	7.163
100497038	GT-AG	1.000000099473604e-05	1178	rna-XM_017426363.3 18874305	4	32327516	32328693	Kryptolebias marmoratus 37003	CAG\|GTTAGATTTT...TTTTCTTTAGAA/GTAAATCTCACA...TCTAG\|GGG	1	1	12.633
100497039	GT-AG	0.0002233666922949	2607	rna-XM_017426363.3 18874305	5	32332570	32335176	Kryptolebias marmoratus 37003	CTG\|GTATGTATGA...GTCTCTGTACAT/TCTCTGTACATC...TTTAG\|CGC	1	1	66.858
100497040	GT-AG	1.000000099473604e-05	733	rna-XM_017426363.3 18874305	6	32335634	32336366	Kryptolebias marmoratus 37003	CAG\|GTAAGAAAGT...TCATTTTTATCG/CTCATTTTTATC...TGCAG\|TTT	2	1	73.251
100497041	GT-AG	0.0001288385929307	350	rna-XM_017426363.3 18874305	7	32336694	32337043	Kryptolebias marmoratus 37003	CAG\|GTATGTAGAT...CAATTCTGAACT/AGAAAACTAACA...TGCAG\|ATA	2	1	77.826
100508795	GT-AG	1.000000099473604e-05	1171	rna-XM_017426363.3 18874305	1	32323687	32324857	Kryptolebias marmoratus 37003	AAG\|GTGAGGTCAT...GTGTTGTTAACT/GTGTTGTTAACT...GTTAG\|TTA		0	2.882

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);