WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 18699389

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99736131	GT-AG	0.3602614871356048	557	rna-XM_018966534.2 18699389	2	4297239	4297795	Juglans regia 51240	GAG\|GTACCCTTTC...ATATACTAATTG/AATATACTAATT...ACCAG\|AAT	0	1	24.978
99736132	GT-AG	9.350574885761324e-05	391	rna-XM_018966534.2 18699389	3	4299046	4299436	Juglans regia 51240	AAG\|GTATATGTAA...TGATCATTATAG/TAGTATCTCATT...TACAG\|ATT	2	1	61.581
99736133	GT-AG	1.1315573970384028e-05	143	rna-XM_018966534.2 18699389	4	4299735	4299877	Juglans regia 51240	CAG\|GTAAATTCCC...AGTTTCTTCGTT/AGTTATCTGACC...TCCAG\|ACT	0	1	70.307
99736134	GT-AG	1.000000099473604e-05	620	rna-XM_018966534.2 18699389	5	4300103	4300722	Juglans regia 51240	TTG\|GTAAAACTTT...TGGCTCTTGAAA/AAAAATCTGACA...TCTAG\|ATA	0	1	76.896
99736135	GT-AG	0.0004335653427383	361	rna-XM_018966534.2 18699389	6	4300897	4301257	Juglans regia 51240	GCG\|GTAAACACGC...CTTTCTTTATTT/ACTTTCTTTATT...ATCAG\|ATT	0	1	81.991
99736136	GT-AG	1.000000099473604e-05	96	rna-XM_018966534.2 18699389	7	4301423	4301518	Juglans regia 51240	GAG\|GTTCAGCCCT...GGTACTTTACTT/TAGTTACTTATG...TGAAG\|GTA	0	1	86.823
99736137	GT-AG	1.000000099473604e-05	275	rna-XM_018966534.2 18699389	8	4301633	4301907	Juglans regia 51240	GAG\|GTTACACAAC...ATTTTCTTGCAC/ATTAGCCTGATA...TGTAG\|GAT	0	1	90.161
99746299	GT-AG	0.1429233116603608	472	rna-XM_018966534.2 18699389	1	4295909	4296380	Juglans regia 51240	CCG\|GTAACTTTTC...TTATTTTTATTG/TTTTTATTGATT...TGCAG\|AGT		0	4.246

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);