WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 18699352

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99735727	GT-AG	3.1502419715889395e-05	104	rna-XM_018958252.2 18699352	1	295332	295435	Juglans regia 51240	AAG\|GTCTGTTACC...TTTTTCTTTCCT/TGTATTCTTATG...TGCAG\|TAT	0	1	6.56
99735728	GT-AG	0.0002371628547256	345	rna-XM_018958252.2 18699352	2	295491	295835	Juglans regia 51240	CAG\|GTACGCAATA...CCAACTTTGAAA/TGTTTTCCAACT...GCCAG\|AGA	1	1	8.027
99735729	GT-AG	5.385625787031679e-05	429	rna-XM_018958252.2 18699352	3	296012	296440	Juglans regia 51240	AAG\|GTTTACAAAC...GATTTATTAACC/GATTTATTAACC...TTCAG\|GTC	0	1	12.72
99735730	GT-AG	1.000000099473604e-05	207	rna-XM_018958252.2 18699352	4	296642	296848	Juglans regia 51240	CAG\|GTGAGGAAGA...AGTCCTTTATCA/CCTAATTTGATT...CATAG\|GCC	0	1	18.08
99735731	GT-AG	1.000000099473604e-05	88	rna-XM_018958252.2 18699352	5	297109	297196	Juglans regia 51240	CAT\|GTAAGACTTC...TAAGCTTTAGTC/GCTTTAGTCACA...TACAG\|GAG	2	1	25.013
99735732	GT-AG	1.000000099473604e-05	92	rna-XM_018958252.2 18699352	6	297514	297605	Juglans regia 51240	AGG\|GTAATAAGGA...AGGCTCTTGATG/GATGAACTGATT...TGCAG\|GGC	1	1	33.467
99735733	GT-AG	1.000000099473604e-05	123	rna-XM_018958252.2 18699352	7	297830	297952	Juglans regia 51240	CAG\|GTTGGTGCAT...GTTCCTGTAAAT/GTGCTTCTAATG...ACTAG\|GTT	0	1	39.44
99735734	GT-AG	5.106435351988558e-05	160	rna-XM_018958252.2 18699352	8	298773	298932	Juglans regia 51240	CAG\|GTACAGATCT...ACTTTCTTATTA/GACTTTCTTATT...CACAG\|CAA	1	1	61.307
99735735	GT-AG	3.857067636387265e-05	1695	rna-XM_018958252.2 18699352	9	299175	300869	Juglans regia 51240	CAG\|GTAAGCTCAA...TTTATTTTATTT/GTTTATTTTATT...TGCAG\|CAA	0	1	67.76

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);