WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 18699316

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99735226	GT-AG	0.0208424345677534	197	rna-XM_018961273.2 18699316	2	7776250	7776446	Juglans regia 51240	TAG\|GTATCAGTAA...TTATTTTTATTT/TTTATTTTTATT...TGCAG\|ATT	1	1	10.087
99735227	GT-AG	1.000000099473604e-05	90	rna-XM_018961273.2 18699316	3	7774306	7774395	Juglans regia 51240	AAG\|GTAGAAACAT...CTATTTTTAGCT/CATGAACTGACT...GATAG\|GTG	1	1	43.13
99735228	GT-AG	1.000000099473604e-05	87	rna-XM_018961273.2 18699316	4	7773704	7773790	Juglans regia 51240	AAG\|GTGAACATTA...TTCTCCTTTCTT/CCTTTCTTTATG...TACAG\|GTG	0	1	52.308
99735229	GT-AG	1.000000099473604e-05	282	rna-XM_018961273.2 18699316	5	7773297	7773578	Juglans regia 51240	AAG\|GTAGTTGGTC...TTTTTCTGATTT/CTTTTTCTGATT...GGCAG\|TGA	2	1	54.536
99735230	GT-AG	1.000000099473604e-05	339	rna-XM_018961273.2 18699316	6	7771050	7771388	Juglans regia 51240	CAG\|GTTTTTGCAT...CACTGCTTACTT/TCTCTGTTCATT...TGCAG\|TGT	2	1	88.54
99735231	GT-AG	1.000000099473604e-05	105	rna-XM_018961273.2 18699316	7	7770896	7771000	Juglans regia 51240	AAG\|GTTTGGTCCT...ATTGTCGTAATC/AATATTGTCATT...GGCAG\|GCG	0	1	89.414
99735232	GT-AG	1.000000099473604e-05	306	rna-XM_018961273.2 18699316	8	7770339	7770644	Juglans regia 51240	CTT\|GTAAGTATAG...TCATCTGTAAAC/ATAAATTTCATC...TGCAG\|GAT	2	1	93.887
99735233	GT-AG	3.0229538517932888e-05	367	rna-XM_018961273.2 18699316	9	7769861	7770227	Juglans regia 51240	TAG\|GTATGAAACA...CGCGTTTTAATA/CGCGTTTTAATA...TGCAG\|ATT	2	1	95.865
99746261	GT-AG	1.000000099473604e-05	1001	rna-XM_018961273.2 18699316	1	7776831	7777831	Juglans regia 51240	AGA\|GTAATTGACT...TCTCTCTCATTT/CATTTACTAACT...TGCAG\|GTT		0	6.648

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);