WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 18699303

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99734967	GT-AG	0.0306306464394686	2709	rna-XM_018967522.2 18699303	1	3063329	3066037	Juglans regia 51240	GAG\|GTATTCATTT...ATTGTCATAATT/TAATTACTTACT...TTTAG\|AAA	2	1	7.531
99734968	GT-AG	1.000000099473604e-05	154	rna-XM_018967522.2 18699303	2	3066699	3066852	Juglans regia 51240	AAT\|GTAAGGTTAC...TATGCTTTACAT/TGTTGTCTCATT...TTCAG\|GAT	0	1	17.31
99734969	GT-AG	0.0001514100408807	119	rna-XM_018967522.2 18699303	3	3067987	3068105	Juglans regia 51240	CAG\|GTATGTCCAT...GAGGCCTTACTA/ATTTTTTTTATA...TCTAG\|GCA	0	1	34.088
99734970	GT-AG	0.0010459762329657	827	rna-XM_018967522.2 18699303	4	3068799	3069625	Juglans regia 51240	CTT\|GTAAGTCTCT...TCTTCTTTAACC/CATGCTCTAATT...TTCAG\|TTG	0	1	44.341
99734971	GT-AG	1.000000099473604e-05	1232	rna-XM_018967522.2 18699303	5	3069938	3071169	Juglans regia 51240	AAG\|GTGCTATTTA...TATTTCTGAATT/ATATTTCTGAAT...CACAG\|AAA	0	1	48.957
99734972	GT-AG	0.0006135993671089	369	rna-XM_018967522.2 18699303	6	3071506	3071874	Juglans regia 51240	GAG\|GTCTGTTTTC...GATTTATTGACC/GTTTGATTTATT...TGCAG\|TTA	0	1	53.928
99734973	GT-AG	1.000000099473604e-05	262	rna-XM_018967522.2 18699303	7	3071974	3072235	Juglans regia 51240	GAG\|GTTTGTAACC...TTCTCCATATTA/CCTGTGTTAAGT...TGCAG\|GTT	0	1	55.393
99734974	GT-AG	7.79923858816263e-05	1580	rna-XM_018967522.2 18699303	8	3072668	3074247	Juglans regia 51240	GAG\|GTTTGTCTGT...TGTTCCTTTACT/CCTTTACTGATA...TGCAG\|AGA	0	1	61.784
99734975	GT-AG	1.000000099473604e-05	506	rna-XM_018967522.2 18699303	9	3076528	3077033	Juglans regia 51240	GAG\|GTCAGTCACA...AATTACTTATTA/TAATTACTTATT...TTCAG\|ATG	0	1	95.517

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);