WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 18666357

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99589395	GT-AG	0.0004846172526653	1038	rna-XM_041171874.1 18666357	1	34884412	34885449	Juglans microcarpa x juglans regia 2249226	GCG\|GTATGTGTAC...GCTCCTTTGGCA/GAGGCATTCATA...AACAG\|ATG	0	1	55.224
99589396	GT-AG	1.000000099473604e-05	113	rna-XM_041171874.1 18666357	2	34885583	34885695	Juglans microcarpa x juglans regia 2249226	AAT\|GTAATGATCT...CTTGTTTTATCA/CCTTGTTTTATC...TGTAG\|ATC	1	1	58.532
99589397	GT-AG	0.0001628671182806	566	rna-XM_041171874.1 18666357	3	34885785	34886350	Juglans microcarpa x juglans regia 2249226	GAG\|GTAATTTTTT...TATTTCTGAATG/TTGAATTTTACT...TACAG\|CTC	0	1	60.746
99589398	GT-AG	0.0005286086192052	963	rna-XM_041171874.1 18666357	4	34886590	34887552	Juglans microcarpa x juglans regia 2249226	TGG\|GTAAGCTCTA...GATGTTTTAGTT/ATTTGTTTGATG...TCCAG\|ATC	2	1	66.692
99589399	GT-AG	2.199449799766653e-05	244	rna-XM_041171874.1 18666357	5	34887640	34887883	Juglans microcarpa x juglans regia 2249226	CAG\|GTGCCAACTT...TGATTCTTACCA/GTGATTCTTACC...GTTAG\|GTT	2	1	68.856
99589400	GT-AG	0.0003097695926763	137	rna-XM_041171874.1 18666357	6	34887984	34888120	Juglans microcarpa x juglans regia 2249226	TCA\|GTAAGCTACA...TTGCTTTTCATG/TTGCTTTTCATG...TGAAG\|GCT	0	1	71.343
99589401	GT-AG	1.2301210720007611e-05	85	rna-XM_041171874.1 18666357	7	34888335	34888419	Juglans microcarpa x juglans regia 2249226	TGG\|GTACTAGCTG...TTAACCTTAGAT/CTTAGATTTATG...AGTAG\|GTG	1	1	76.667

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);