WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 18666355

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99589372	GT-AG	1.4790021097028168e-05	1003	rna-XM_041133404.1 18666355	1	32079032	32080034	Juglans microcarpa x juglans regia 2249226	GAG\|GTAAATTTAC...TCACTCTTACAT/TATCTCCTCACT...TGTAG\|GCT	0	1	37.76
99589373	GT-AG	4.6104119205699385	373	rna-XM_041133404.1 18666355	2	32077918	32078290	Juglans microcarpa x juglans regia 2249226	GAG\|GTATCTCTTA...ATTCTCTTGAAC/ATTCTCTTGAAC...GACAG\|ATT	0	1	56.083
99589374	GT-AG	0.0002294767431396	336	rna-XM_041133404.1 18666355	3	32077096	32077431	Juglans microcarpa x juglans regia 2249226	CAA\|GTATGGTAAT...TGATTCTGAATA/TTGATTCTGAAT...TCCAG\|AAG	0	1	68.101
99589375	GT-AG	1.000000099473604e-05	143	rna-XM_041133404.1 18666355	4	32076861	32077003	Juglans microcarpa x juglans regia 2249226	TTG\|GTAAGGCCTG...TTTTTCTTATCC/CTTTTTCTTATC...AACAG\|TTA	2	1	70.376
99589376	GT-AG	0.0026998371478209	102	rna-XM_041133404.1 18666355	5	32076671	32076772	Juglans microcarpa x juglans regia 2249226	CAG\|GTACATTTTT...ATTGACTTGATT/AGAATATTGACT...CTCAG\|AGG	0	1	72.552
99589377	GT-AG	1.000000099473604e-05	94	rna-XM_041133404.1 18666355	6	32076462	32076555	Juglans microcarpa x juglans regia 2249226	AAG\|GTGACAGGGT...TTGGCATTGACT/TTGGCATTGACT...TGCAG\|TCA	1	1	75.396
99589378	GT-AG	1.000000099473604e-05	81	rna-XM_041133404.1 18666355	7	32076257	32076337	Juglans microcarpa x juglans regia 2249226	CAG\|GTGGATATCC...TGATACGTAACT/AAGATGCTGATA...TACAG\|GGG	2	1	78.462
99589379	GT-AG	1.000000099473604e-05	751	rna-XM_041133404.1 18666355	8	32075331	32076081	Juglans microcarpa x juglans regia 2249226	CAG\|GTAGTGATCT...CAAGTTTTAATT/CAAGTTTTAATT...AGCAG\|GAT	0	1	82.789

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);