WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 18602169

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99340198	GT-AG	1.000000099473604e-05	87	rna-XM_020684403.2 18602169	3	1742960	1743046	Jatropha curcas 180498	CAG\|GTTCGTTACC...AATTACTTGAAT/ATAGTTCTAATT...TACAG\|GTA	0	1	24.284
99340199	GT-AG	2.2969071580276465e-05	79	rna-XM_020684403.2 18602169	4	1742754	1742832	Jatropha curcas 180498	TTA\|GTAAGATGTC...TTTATTTTAATT/TTTATTTTAATT...TGAAG\|GTC	1	1	29.792
99340200	GT-AG	0.0448628020789282	100	rna-XM_020684403.2 18602169	5	1741726	1741825	Jatropha curcas 180498	AAG\|GTATGCTTCA...TTTTGCTTACTT/TTTTTGCTTACT...TGTAG\|ATC	2	1	70.035
99340201	GT-AG	1.000000099473604e-05	195	rna-XM_020684403.2 18602169	6	1741365	1741559	Jatropha curcas 180498	CAG\|GTGAATGAGA...AGTTCCTTGAAA/TAAATGCTCATT...TGCAG\|GTG	0	1	77.233
99340202	GT-AG	0.000398868618164	85	rna-XM_020684403.2 18602169	7	1741115	1741199	Jatropha curcas 180498	AAG\|GTAAGCTTTT...TTGTCGTTGATT/AGAATTTTCATG...GCCAG\|CAG	0	1	84.389
99340203	GT-AG	0.0001726027428506	153	rna-XM_020684403.2 18602169	8	1740806	1740958	Jatropha curcas 180498	AAG\|GTACTATTTA...GAATCCTGAACA/TGAATCCTGAAC...TCTAG\|GAA	0	1	91.154
99341240	GT-AG	5.306962984360021e-05	109	rna-XM_020684403.2 18602169	1	1743823	1743931	Jatropha curcas 180498	ATG\|GTAAACAGTT...TTCTCTTCAATT/TCAAATCTCAGT...TGCAG\|GTA		0	5.768
99341241	GT-AG	1.000000099473604e-05	326	rna-XM_020684403.2 18602169	2	1743388	1743713	Jatropha curcas 180498	CAG\|GTATGACAAA...ACATCATTAAGA/AAAAACATCATT...TGCAG\|GCA		0	10.494

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);