WtMTA: introns: 10 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 18602167

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99340184	GT-AG	0.0013313868634621	82	rna-XM_020681621.2 18602167	1	1421556	1421637	Jatropha curcas 180498	ACC\|GTAAGTTTCT...GTTCCCTTTTCT/GTTGAATTCAAT...CTTAG\|CTT	0	1	3.147
99340185	GC-AG	1.000000099473604e-05	106	rna-XM_020681621.2 18602167	2	1421773	1421878	Jatropha curcas 180498	GAA\|GCAAGTTTCT...ATTTATTTATTT/TATTTATTTATT...AACAG\|GAA	0	1	9.585
99340186	GT-AG	0.0130304764291665	377	rna-XM_020681621.2 18602167	3	1421978	1422354	Jatropha curcas 180498	TTA\|GTAAGCTTTC...TCTCTTTTATTC/CTTTTATTCATT...TGCAG\|ATA	0	1	14.306
99340187	GT-AG	6.20472435390106e-05	87	rna-XM_020681621.2 18602167	4	1422442	1422528	Jatropha curcas 180498	TCT\|GTAAGTTAAT...ATTTTCTCGATA/TTGTGTTTCATT...TGCAG\|GCA	0	1	18.455
99340188	GT-AG	1.000000099473604e-05	307	rna-XM_020681621.2 18602167	5	1423144	1423450	Jatropha curcas 180498	TTG\|GTAAGGATAT...TATTTCTACATA/ATCCATTTCAGT...TGCAG\|ATG	0	1	47.783
99340189	GT-AG	0.0002054216399111	568	rna-XM_020681621.2 18602167	6	1423934	1424501	Jatropha curcas 180498	GAG\|GTTTGTACTC...GTTTCCTTAATA/TGTTTCCTTAAT...TACAG\|GAT	0	1	70.815
99340190	GT-AG	4.3051286096073215e-05	93	rna-XM_020681621.2 18602167	7	1424564	1424656	Jatropha curcas 180498	ACT\|GTAAGCACAG...TAAATCTGAAAT/TGTTGGGTTATA...TGCAG\|GTC	2	1	73.772
99340191	GC-AG	1.000000099473604e-05	171	rna-XM_020681621.2 18602167	8	1424763	1424933	Jatropha curcas 180498	GAG\|GCAAGTCTTA...ATCTTCTTCTCC/CAAACTTTTACA...TGCAG\|TTG	0	1	78.827
99340192	GT-AG	0.0001505131858916	224	rna-XM_020681621.2 18602167	9	1425014	1425237	Jatropha curcas 180498	AAG\|GTTTGTCTTT...TGTTTCTTATTT/ATGTTTCTTATT...TGCAG\|GTG	2	1	82.642
99340193	GT-AG	2.2031452886431688e-05	579	rna-XM_020681621.2 18602167	10	1425568	1426146	Jatropha curcas 180498	ACG\|GTAATGTTAT...AATTCTTTATTC/TCTTTATTCATG...GGCAG\|TTT	2	1	98.379

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);