WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 18602101

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99339687	GT-AG	0.0053167592653414	127	rna-XM_012211355.3 18602101	2	814397	814523	Jatropha curcas 180498	CAG\|GTATTTCTGT...CCTGTCTTAATT/TTTGTGTTTATT...GACAG\|GCC	0	1	24.705
99339688	GT-AG	0.001524531931525	437	rna-XM_012211355.3 18602101	3	814600	815036	Jatropha curcas 180498	TTG\|GTATTACATG...TTTCTCTTAACA/CAGTTACTAAAT...TGCAG\|GTT	1	1	32.185
99339689	GT-AG	0.0117940252949173	90	rna-XM_012211355.3 18602101	4	815121	815210	Jatropha curcas 180498	TTA\|GTATGTCTGT...ATTATATTATTT/TTATTTGTCAAT...TCTAG\|ATA	1	1	40.453
99339690	GT-AG	1.000000099473604e-05	1532	rna-XM_012211355.3 18602101	5	815267	816798	Jatropha curcas 180498	CAG\|GTACTAACAC...TTTGCTCTAATA/TTTGCTCTAATA...TGCAG\|GGA	0	1	45.965
99339691	GT-AG	1.000000099473604e-05	1260	rna-XM_012211355.3 18602101	6	816856	818115	Jatropha curcas 180498	CAG\|GTTAGATTAT...TTTTCCTTATTT/TTATTTTTTATT...GGCAG\|TGG	0	1	51.575
99339692	GT-AG	0.0028574738321246	162	rna-XM_012211355.3 18602101	7	818166	818327	Jatropha curcas 180498	GAA\|GTATGTCTAT...TCGTTGTTAATT/TCTATCCTCATT...TTTAG\|GGC	2	1	56.496
99339693	GT-AG	0.2431572234267246	1184	rna-XM_012211355.3 18602101	8	818481	819664	Jatropha curcas 180498	CAG\|GTATTCTATG...TTTACTTTGATG/ACTATTTTTACT...TGCAG\|TTC	2	1	71.555
99339694	GT-AG	1.000000099473604e-05	97	rna-XM_012211355.3 18602101	9	819789	819885	Jatropha curcas 180498	ACA\|GTGAGTTCGT...TAATCATTATTT/TCATTATTTATG...TGCAG\|GTT	0	1	83.76
99339767	GT-AG	4.024617226085519e-05	217	rna-XM_012211355.3 18602101	1	814074	814290	Jatropha curcas 180498	TAG\|GTACAAATTT...TTGGTTTTGATT/ATTTTTCTGATT...TTTAG\|CTA		0	14.961

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);